hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg04702/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0411  ( 682 res)   mbg04702

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   GTPase-activator protein for Rho-like GTPase   183.4    2.1e-50   1
FCH      Fes/CIP4 homology domain                        68.2    1.1e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FCH        1/1      56   154 ..     1   103 []    68.2  1.1e-15
RhoGAP     1/1     527   682 .]     1   193 []   183.4  2.1e-50

Alignments of top-scoring domains:
FCH: domain 1 of 1, from 56 to 154: score 68.2, E = 1.1e-15
                   *->mgfwselwsddGfeaLlsrlknglrlledlkkflreRakiEeeYAkk
                      ++++ +l  +++f++L+++ ++ l+ll+dl++f+r++a+iE eY+++
   mKIAA0411    56    KEIRTQL--VEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRS 100  

                   Lqklskkyfnkkssvgdlravreteselgslkkswevllsetdalakshl
                   L kl++++++k   +   +++++++  l+++ ++w  +l++t+++++ h 
   mKIAA0411   101 LEKLAERFSSKIR-SSREHQFKKDQYLLSPV-NCWYLVLHQTRRESRDHA 148  

                   qlsedL<-*
                   +l + +   
   mKIAA0411   149 TLNDIF    154  

RhoGAP: domain 1 of 1, from 527 to 682: score 183.4, E = 2.1e-50
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      + iP++ve+Ci+++  +Gl+++GI+Rv+Gs+ +v+ ++++f++ged+
   mKIAA0411   527    QAIPLVVESCIRFINLYGLQQQGIFRVPGSQVEVNDIKNSFERGEDp 573  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                               + d +e+d+++vAg+LKly+R L +PL+++e ++++i+
   mKIAA0411   574 L-----------VDDQNERDINSVAGVLKLYFRGLENPLFPKERFQDLIS 612  

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                    +kl              e++  r++ ++++l +LP++   ++ryL+ +L
   mKIAA0411   613 TIKL--------------ENPADRVHPIQQILITLPRVVIVVMRYLFaFL 648  

                   nrVaehsevNkMtarNLAivFgPtLlrppltdikhqnkvvetlienad<-
                   n+++++s++N+M++ NLAi+FgPtL++ p                + +  
   mKIAA0411   649 NHLSQYSDENMMDPYNLAICFGPTLMHIP--------------DGQDW   682  

                   *
                    
   mKIAA0411     -   -    

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