hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg04702/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0411 ( 682 res) mbg04702 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RhoGAP GTPase-activator protein for Rho-like GTPase 183.4 2.1e-50 1 FCH Fes/CIP4 homology domain 68.2 1.1e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- FCH 1/1 56 154 .. 1 103 [] 68.2 1.1e-15 RhoGAP 1/1 527 682 .] 1 193 [] 183.4 2.1e-50 Alignments of top-scoring domains: FCH: domain 1 of 1, from 56 to 154: score 68.2, E = 1.1e-15 *->mgfwselwsddGfeaLlsrlknglrlledlkkflreRakiEeeYAkk ++++ +l +++f++L+++ ++ l+ll+dl++f+r++a+iE eY+++ mKIAA0411 56 KEIRTQL--VEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRS 100 Lqklskkyfnkkssvgdlravreteselgslkkswevllsetdalakshl L kl++++++k + +++++++ l+++ ++w +l++t+++++ h mKIAA0411 101 LEKLAERFSSKIR-SSREHQFKKDQYLLSPV-NCWYLVLHQTRRESRDHA 148 qlsedL<-* +l + + mKIAA0411 149 TLNDIF 154 RhoGAP: domain 1 of 1, from 527 to 682: score 183.4, E = 2.1e-50 *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged. + iP++ve+Ci+++ +Gl+++GI+Rv+Gs+ +v+ ++++f++ged+ mKIAA0411 527 QAIPLVVESCIRFINLYGLQQQGIFRVPGSQVEVNDIKNSFERGEDp 573 dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie + d +e+d+++vAg+LKly+R L +PL+++e ++++i+ mKIAA0411 574 L-----------VDDQNERDINSVAGVLKLYFRGLENPLFPKERFQDLIS 612 aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL +kl e++ r++ ++++l +LP++ ++ryL+ +L mKIAA0411 613 TIKL--------------ENPADRVHPIQQILITLPRVVIVVMRYLFaFL 648 nrVaehsevNkMtarNLAivFgPtLlrppltdikhqnkvvetlienad<- n+++++s++N+M++ NLAi+FgPtL++ p + + mKIAA0411 649 NHLSQYSDENMMDPYNLAICFGPTLMHIP--------------DGQDW 682 * mKIAA0411 - - //