hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg04702/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0411  ( 682 res)   mbg04702

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   RhoGAP domain                                  216.4    4.3e-61   1
FCH      Fes/CIP4 homology domain                        84.4    2.3e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FCH        1/1      56   154 ..     1   107 []    84.4  2.3e-21
RhoGAP     1/1     530   682 .]     1   155 []   216.4  4.3e-61

Alignments of top-scoring domains:
FCH: domain 1 of 1, from 56 to 154: score 84.4, E = 2.3e-21
                   *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk
                      ++++++l  ++++k+L+++ +++l+ll+dl++F+r++a+iE eY+++
   mKIAA0411    56    KEIRTQL--VEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRS 100  

                   LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls
                   L+kl++++ +k R     +s  + ++k++  ls++ ++w  +l +t ++s
   mKIAA0411   101 LEKLAERFSSKIR-----SSREHQFKKDQYLLSPV-NCWYLVLHQTRRES 144  

                   klHsqlseqL<-*
                   ++H +l +++   
   mKIAA0411   145 RDHATLNDIF    154  

RhoGAP: domain 1 of 1, from 530 to 682: score 216.4, E = 4.3e-61
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      Pl+ve+Ci+f+  +GL+++GI+Rv+Gs+ +++ +++ f+rged+   
   mKIAA0411   530    PLVVESCIRFINLYGLQQQGIFRVPGSQVEVNDIKNSFERGEDPLVD 576  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   d +e d+++vA++LKl++R L +PL+++e ++++i   +k+e++ +r++ 
   mKIAA0411   577 DQNERDINSVAGVLKLYFRGLENPLFPKERFQDLIS-TIKLENPADRVHP 625  

                   lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr
                   ++++l +LP++   ++ryL+a+Ln+ +q+s++N+M+++NLAi+FgPtL++
   mKIAA0411   626 IQQILITLPRVVIVVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMH 675  

                   ppdgdsad<-*
                    pdg ++    
   mKIAA0411   676 IPDG-QDW    682  

//