hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg04702/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0411 ( 682 res) mbg04702 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RhoGAP RhoGAP domain 216.4 4.3e-61 1 FCH Fes/CIP4 homology domain 84.4 2.3e-21 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- FCH 1/1 56 154 .. 1 107 [] 84.4 2.3e-21 RhoGAP 1/1 530 682 .] 1 155 [] 216.4 4.3e-61 Alignments of top-scoring domains: FCH: domain 1 of 1, from 56 to 154: score 84.4, E = 2.3e-21 *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk ++++++l ++++k+L+++ +++l+ll+dl++F+r++a+iE eY+++ mKIAA0411 56 KEIRTQL--VEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRS 100 LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls L+kl++++ +k R +s + ++k++ ls++ ++w +l +t ++s mKIAA0411 101 LEKLAERFSSKIR-----SSREHQFKKDQYLLSPV-NCWYLVLHQTRRES 144 klHsqlseqL<-* ++H +l +++ mKIAA0411 145 RDHATLNDIF 154 RhoGAP: domain 1 of 1, from 530 to 682: score 216.4, E = 4.3e-61 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln Pl+ve+Ci+f+ +GL+++GI+Rv+Gs+ +++ +++ f+rged+ mKIAA0411 530 PLVVESCIRFINLYGLQQQGIFRVPGSQVEVNDIKNSFERGEDPLVD 576 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea d +e d+++vA++LKl++R L +PL+++e ++++i +k+e++ +r++ mKIAA0411 577 DQNERDINSVAGVLKLYFRGLENPLFPKERFQDLIS-TIKLENPADRVHP 625 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr ++++l +LP++ ++ryL+a+Ln+ +q+s++N+M+++NLAi+FgPtL++ mKIAA0411 626 IQQILITLPRVVIVVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMH 675 ppdgdsad<-* pdg ++ mKIAA0411 676 IPDG-QDW 682 //