hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm02292/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0407  ( 1207 res)   mpm02292

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IPT      ig-like, plexins, transcription factors        200.6    1.4e-55   3
PSI      domain found in Plexins, Semaphorins and Int    33.0    4.1e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/1     107   154 ..     1    56 []    33.0  4.1e-05
IPT        1/3     155   246 ..     1   111 []    74.7  1.1e-17
IPT        2/3     247   335 ..     1   111 []    88.9    6e-22
IPT        3/3     337   447 ..     1   111 []    45.0  9.7e-09

Alignments of top-scoring domains:
PSI: domain 1 of 1, from 107 to 154: score 33.0, E = 4.1e-05
                   *->rCsqygvtsCseCllardpygCgWCss.egrCtrgerCderrgsrqn
                      +Cs+++ ++Cs C  a + y C WC +++ rC+++e+C+e     ++
   mKIAA0407   107    DCSVGH-GDCSRCQTAMPQYDCVWCEGeRPRCVAREACNE-----AE 147  

                   wssgpssqCp<-*
                    +    +qCp   
   mKIAA0407   148 TVA---TQCP    154  

IPT: domain 1 of 3, from 155 to 246: score 74.7, E = 1.1e-17
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                       P I++++P +Gp+ GGt r+t++G+nL+ ++++v   v v+    +
   mKIAA0407   155    APLIHSVDPLTGPIDGGT-RVTIRGSNLGQHVQDVLDMVRVA----G 196  

                   vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg
                   vpC ++  ++     s+++vC t+++ ++   +g+v v    ev  ++ g
   mKIAA0407   197 VPCAVDAGEYD---VSSSLVCITGASGEE--VTGTVAV----EVPGRGHG 237  

                   vrtelsppspFtYv<-*
                   v+      ++F Y    
   mKIAA0407   238 VSE-----FSFAYQ    246  

IPT: domain 2 of 3, from 247 to 335: score 88.9, E = 6e-22
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                      dP++++i+P +Gp++GGt r+tl+G+ L + g  + +rv vg     
   mKIAA0407   247    DPKVHSIFPARGPRAGGT-RLTLHGSKLLT-GRLEDIRVVVG----D 287  

                   vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg
                   +pC++l ++++     +++ C+t+py+     p++ pv    +v f+  +
   mKIAA0407   288 QPCHLLLEQQS-----EQLHCETGPYP----VPAELPV----TVLFGATE 324  

                   vrtelsppspFtYv<-*
                   +r +     +F Y+   
   mKIAA0407   325 RRLQ---HGQFKYT    335  

IPT: domain 3 of 3, from 337 to 447: score 45.0, E = 9.7e-09
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                      dP +t++ Ps+++ sGG+ +i ++G++Ld+ ++++++rv+v      
   mKIAA0407   337    DPNVTSVGPSKSFFSGGR-EIWVRGQDLDV-VQRPRIRVTV------ 375  

                   vpCtflpsdvhG.............kdsstaivCrtPpylnqspgpgsvp
                   vp ++ +   ++++  +++ +++  ++ss+ + CrtP+ ++   +p +  
   mKIAA0407   376 VPRQHGQGLAQKqhvvpekfeepclVNSSHLLMCRTPALPG---PPWDSG 422  

                   vrvtgevgfdnggvrte.l.sppspFtYv<-*
                   v    +v f+++++ ++   ++p pF+Y    
   mKIAA0407   423 V----QVEFILDNMVFDfAaLSPTPFSYE    447  

//