hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm02292/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0407  ( 1207 res)   mpm02292

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIG      IPT/TIG domain                                 221.7      1e-62   3
PSI      Plexin repeat                                   39.8    6.4e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/1     107   154 ..     1    63 []    39.8  6.4e-08
TIG        1/3     156   246 ..     1   105 []    74.9  1.7e-18
TIG        2/3     248   335 ..     1   105 []    86.3  6.2e-22
TIG        3/3     338   447 ..     1   105 []    66.0  7.8e-16

Alignments of top-scoring domains:
PSI: domain 1 of 1, from 107 to 154: score 39.8, E = 6.4e-08
                   *->nCsqy.tsCssCLaardpfyCgWCss.egrCtrgsaytsfyGeCpra
                      +Cs+ +++Cs+C  a + + C WC++++ rC+ ++        C++a
   mKIAA0407   107    DCSVGhGDCSRCQTAMPQYDCVWCEGeRPRCVARE-------ACNEA 146  

                   ependqwldwswssskCp<-*
                   e          ++  +Cp   
   mKIAA0407   147 E----------TVATQCP    154  

TIG: domain 1 of 3, from 156 to 246: score 74.9, E = 1.7e-18
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                      P I+s+ P++gp++GGt++Ti+Gsnlg         ++++d   +V+
   mKIAA0407   156    PLIHSVDPLTGPIDGGTRVTIRGSNLG---------QHVQDVLDMVR 193  

                   fggtpvpCdvisssss..tqivCktPpva.ggpsppvvtvsvdgggsgdg
                   ++g+p  C v+  +++ ++++vC t+++ ++ +    v v+v g g    
   mKIAA0407   194 VAGVP--CAVDAGEYDvsSSLVCITGASGeEVTGT--VAVEVPGRG---- 235  

                   rssspvtFtYv<-*
                    + s+ +F Y+   
   mKIAA0407   236 HGVSEFSFAYQ    246  

TIG: domain 2 of 3, from 248 to 335: score 86.3, E = 6.2e-22
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                      P+++si+P +gp +GGt++T++Gs+l +g           +edi+V+
   mKIAA0407   248    PKVHSIFPARGPRAGGTRLTLHGSKLLTG----------RLEDIRVV 284  

                   fggtpvpCdvissssstqivCktPpva.ggpsppvvtvsvdgggsgdgrs
                   +g++p  C++   ++s+q+ C+t+p++ + + p  vtv ++  +    r+
   mKIAA0407   285 VGDQP--CHLLLEQQSEQLHCETGPYPvPAELP--VTVLFGATE----RR 326  

                   sspvtFtYv<-*
                    + ++F Y+   
   mKIAA0407   327 LQHGQFKYT    335  

TIG: domain 3 of 3, from 338 to 447: score 66.0, E = 7.8e-16
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                      P +ts++Ps+++ sGG ei ++G++l+ +++Prir          Vt
   mKIAA0407   338    PNVTSVGPSKSFFSGGREIWVRGQDLDVVQRPRIR----------VT 374  

                   fggtpv.................pCdvissssstqivCktPpva.ggpsp
                   +  +  +++  ++++  +++ ++pC v+ss+    + C+tP+++++    
   mKIAA0407   375 VVPRQHgqglaqkqhvvpekfeePCLVNSSHL---LMCRTPALPgPP--- 418  

                   pv..vtvsvdggg.sgdgrssspvtFtYv<-*
                   + ++v+v++ +++ ++d++  sp++F+Y+   
   mKIAA0407   419 WDsgVQVEFILDNmVFDFAALSPTPFSYE    447  

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