hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg12039/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0405 ( 637 res) mbg12039 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_TYP Leucine-rich repeats, typical (most populate 88.3 9e-22 7 LRRCT Leucine rich repeat C-terminal domain 40.0 3.1e-07 1 LRRNT Leucine rich repeat N-terminal domain 29.8 0.00038 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRRNT 1/1 12 44 .. 1 38 [] 29.8 0.00038 LRR_TYP 1/7 84 108 .. 1 24 [] 11.8 15 LRR_TYP 2/7 109 134 .. 1 24 [] 15.7 5.1 LRR_TYP 3/7 136 158 .. 1 24 [] 5.9 80 LRR_TYP 4/7 159 179 .. 1 24 [] 5.8 81 LRR_TYP 5/7 180 205 .. 1 24 [] 13.9 8.3 LRR_TYP 6/7 229 251 .. 1 24 [] 15.0 6.1 LRR_TYP 7/7 252 275 .. 1 24 [] 30.3 0.00027 LRRCT 1/1 287 338 .. 1 55 [] 40.0 3.1e-07 Alignments of top-scoring domains: LRRNT: domain 1 of 1, from 12 to 44: score 29.8, E = 0.00038 *->qCPapCtCspdfgtaVdCsgrgLttlevPldlPadttl<-* +CP C+C V+C +r+Lt +vPl++P+ +t mKIAA0405 12 ACPSVCRCD---RNFVYCNERSLT--SVPLGIPEGVTV 44 LRR_TYP: domain 1 of 7, from 84 to 108: score 11.8, E = 15 *->LpnL.reLdLsnNqLtsLPpgaFqg<-* Lp+ r+L+L+ N+++++ + a++ mKIAA0405 84 LPKNvRVLHLQENNIQTISRAALAQ 108 LRR_TYP: domain 2 of 7, from 109 to 134: score 15.7, E = 5.1 *->LpnLreLdLsnNqLtsLP..pgaFqg<-* L +L+eL+L++N ++++ ++gaF+ mKIAA0405 109 LLKLEELHLDDNSISTVGveDGAFRE 134 LRR_TYP: domain 3 of 7, from 136 to 158: score 5.9, E = 80 *->LpnLreLdLsnNqLtsLPpgaFqg<-* +L+ L Ls N+L+s+P g+ + mKIAA0405 136 -ISLKLLFLSKNHLSSVPVGLPVD 158 LRR_TYP: domain 4 of 7, from 159 to 179: score 5.8, E = 81 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+eL+ + N++ + + aFq+ mKIAA0405 159 ---LQELRVDENRIAVISDMAFQN 179 LRR_TYP: domain 5 of 7, from 180 to 205: score 13.9, E = 8.3 *->LpnLreLdLsnNqL..tsLPpgaFqg<-* L++L++L ++N L+++ + +g+F++ mKIAA0405 180 LTSLERLIVDGNLLtnKGIAEGTFSH 205 LRR_TYP: domain 6 of 7, from 229 to 251: score 15.0, E = 6.1 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++L +L+L++Nq+ ++P aF++ mKIAA0405 229 -THLIRLYLQDNQINHIPLTAFAN 251 LRR_TYP: domain 7 of 7, from 252 to 275: score 30.3, E = 0.00027 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L++Ld snNqL+ L +g+F++ mKIAA0405 252 LRKLERLDISNNQLRMLTQGVFDH 275 LRRCT: domain 1 of 1, from 287 to 338: score 40.0, E = 3.1e-07 *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll NP+ CDC+++w +wl+ ++ l+ + +C +Pe++rG+ +++l mKIAA0405 287 NPWFCDCSIKWVTEWLKY-IPSSLNVR--GFMCQGPEQVRGMAVREL 330 lpsefsCp<-* ++ sCp mKIAA0405 331 NMNLLSCP 338 //