hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg12039/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0405  ( 637 res)   mbg12039

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_1    Leucine Rich Repeat                             93.8    3.4e-24  10
LRRNT    Leucine rich repeat N-terminal domain           30.6    3.6e-05   1
LRRCT    Leucine rich repeat C-terminal domain           24.7     0.0022   1
fn3      Fibronectin type III domain                     19.3       0.02   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRRNT      1/1      12    39 ..     1    34 []    30.6  3.6e-05
LRR_1      1/10     41    65 ..     1    25 []     8.0       96
LRR_1      2/10     66    85 ..     1    25 []     7.4  1.2e+02
LRR_1      3/10     87   110 ..     1    25 []    10.8       33
LRR_1      4/10    111   136 ..     1    25 []    10.0       44
LRR_1      5/10    137   156 ..     1    25 []    12.4       11
LRR_1      6/10    158   181 ..     1    25 []    11.2       25
LRR_1      7/10    182   207 ..     1    25 []    12.5       10
LRR_1      8/10    208   227 ..     1    25 []     7.5  1.2e+02
LRR_1      9/10    230   253 ..     1    25 []    14.2      3.1
LRR_1     10/10    254   277 ..     1    25 []    17.2     0.38
LRRCT      1/1     313   338 ..     1    26 []    24.7   0.0022
fn3        1/1     397   479 ..     1    84 []    19.3     0.02

Alignments of top-scoring domains:
LRRNT: domain 1 of 1, from 12 to 39: score 30.6, E = 3.6e-05
                   *->aCpapCtCserytdglvVdCsgrgLtvavPrdlP<-*
                      aCp  C+C         V+C +r+Lt +vP ++P   
   mKIAA0405    12    ACPSVCRCD-----RNFVYCNERSLT-SVPLGIP    39   

LRR_1: domain 1 of 10, from 41 to 65: score 8.0, E = 96
                   *->nLeeLdLsgCNpslsgs..lppsl.glp<-*
                       +++L+L++ N +++  +++p++l++ +   
   mKIAA0405    41    GVTVLYLHN-N-QIN-NagFPAELhNVQ    65   

LRR_1: domain 2 of 10, from 66 to 85: score 7.4, E = 1.2e+02
                   *->nLeeLdLsgCNpslsgslppslglp<-*
                      ++ +++L g N +l +++p   +lp   
   mKIAA0405    66    SVHTVYLYG-N-QL-DEFPM--NLP    85   

LRR_1: domain 3 of 10, from 87 to 110: score 10.8, E = 33
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      n+++L+L+  N +++ +++  +l  l    
   mKIAA0405    87    NVRVLHLQE-N-NIQ-TISRAaLaQLL    110  

LRR_1: domain 4 of 10, from 111 to 136: score 10.0, E = 44
                   *->nLeeLdLsgCNpslsgs..lpps.l.glp<-*
                      +LeeL+L++ N s+s + ++++++++      
   mKIAA0405   111    KLEELHLDD-N-SIS-TvgVEDGaFrEAI    136  

LRR_1: domain 5 of 10, from 137 to 156: score 12.4, E = 11
                   *->nLeeLdLsgCNpslsgslppslglp<-*
                      +L+ L Ls  N +ls s+p   glp   
   mKIAA0405   137    SLKLLFLSK-N-HLS-SVPV--GLP    156  

LRR_1: domain 6 of 10, from 158 to 181: score 11.2, E = 25
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                       L+eL+++  N ++   +++ ++++l+   
   mKIAA0405   158    DLQELRVDE-N-RIA-VISDMaFqNLT    181  

LRR_1: domain 7 of 10, from 182 to 207: score 12.5, E = 10
                   *->nLeeLdLsgCNpslsgs..lpps.l.glp<-*
                      +Le L ++g N  l+  ++++++++++l+   
   mKIAA0405   182    SLERLIVDG-N-LLT-NkgIAEGtFsHLT    207  

LRR_1: domain 8 of 10, from 208 to 227: score 7.5, E = 1.2e+02
                   *->nLeeLdLsgCNpslsgslppslglp<-*
                      +L+e ++ + N sls + pp  +lp   
   mKIAA0405   208    KLKEFSIVR-N-SLS-HPPP--DLP    227  

LRR_1: domain 9 of 10, from 230 to 253: score 14.2, E = 3.1
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      +L  L+L++ N +++ ++p  ++ +l+   
   mKIAA0405   230    HLIRLYLQD-N-QIN-HIPLTaFaNLR    253  

LRR_1: domain 10 of 10, from 254 to 277: score 17.2, E = 0.38
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      +Le Ld+s+ N +l + l  + +++l+   
   mKIAA0405   254    KLERLDISN-N-QL-RMLTQGvFdHLS    277  

LRRCT: domain 1 of 1, from 313 to 338: score 24.7, E = 0.0022
                   *->dlrCasPeslrGqplldlppsdfsCp<-*
                        +C++Pe++rG+ +++l++  +sCp   
   mKIAA0405   313    GFMCQGPEQVRGMAVRELNMNLLSCP    338  

fn3: domain 1 of 1, from 397 to 479: score 19.3, E = 0.02
                   *->P.saPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.
                      P s+  +l++  v++ts+++sW   +   ++  Y++t+  + ++   
   mKIAA0405   397    PiSERIQLSIHFVNDTSIQVSWLSLF---TVMAYKLTW-VKMGHSLv 439  

                   ...wneltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
                   ++  +e++v+g + +  l +L+P ++Y ++++ +++    +    
   mKIAA0405   440 ggiVQERIVSGEKQHLSLVNLEPRSTYRICLVPLDAF--NYR    479  

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