hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp11090/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0403  ( 423 res)   mbp11090

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       Pleckstrin homology domain.                     82.0    7.3e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1      27   127 ..     1    82 []    82.0  7.3e-20

Alignments of top-scoring domains:
PH: domain 1 of 1, from 27 to 127: score 82.0, E = 7.3e-20
                   *->vikeGwLlkks......k.swkkryfvLfngvLlyyksk...kpkgs
                        ++GwL+kk+ +++  +++wkk ++vL++++L++y +   +k  g+
   mKIAA0403    27    ADCQGWLYKKKekgtflSnKWKKFWVVLKGSSLYWYSNQmaeKADGF 73   

                   ipLsgcsvre.p......cFeivt.dr.tlllqAeseeereeWvealqsa
                   ++Ls+ +v++  + +++++F+i +++ + ++++Ae+ +e++ W++ l  a
   mKIAA0403    74 VNLSDFTVERaSeckkknAFKINHpQIkAFYFAAENLQEMNVWLNKLGFA 123  

                   iaka<-*
                   + ++   
   mKIAA0403   124 VTHQ    127  

//