hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp11090/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0403  ( 423 res)   mbp11090

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       PH domain                                       77.5    2.7e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1      27   125 ..     1    92 []    77.5  2.7e-19

Alignments of top-scoring domains:
PH: domain 1 of 1, from 27 to 125: score 77.5, E = 2.7e-19
                   *->vikeGwLlkkg.....gkkswkkRyfvLfndvLlyykdkk.kkpkgs
                        ++GwL+kk ++++    +wkk ++vL++++L++y +   +k  g 
   mKIAA0403    27    ADCQGWLYKKKekgtfLSNKWKKFWVVLKGSSLYWYSNQMaEKADGF 73   

                   ipLsgiqvekvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsa
                   ++Ls+ +ve++++ k+kn+F+i +++ + ++++ae+ +e++ W++ +  a
   mKIAA0403    74 VNLSDFTVERASECKKKNAFKINHpQIKAFYFAAENLQEMNVWLNKLGFA 123  

                   ir<-*
                   +    
   mKIAA0403   124 VT    125  

//