hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj04247/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0400  ( 970 res)   mfj04247

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ArfGap   Putative GTP-ase activating proteins for the   104.0    1.7e-26   1
PH       Pleckstrin homology domain.                     76.7    2.9e-18   1
SH3      Src homology 3 domains                          68.7    7.2e-16   1
ANK      ankyrin repeats                                 52.4    5.9e-11   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1     321   414 ..     1    82 []    76.7  2.9e-18
ArfGap     1/1     436   556 ..     1   139 []   104.0  1.7e-26
ANK        1/3     599   631 ..     1    30 []    18.3      1.1
ANK        2/3     635   664 ..     1    30 []    32.2  6.9e-05
ANK        3/3     668   698 ..     1    30 []     1.9  2.6e+03
SH3        1/1     911   969 ..     1    58 []    68.7  7.2e-16

Alignments of top-scoring domains:
PH: domain 1 of 1, from 321 to 414: score 76.7, E = 2.9e-18
                   *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk..kpkgsipLs
                      +++ G L+kks++ ++ w+kr + ++ng+L++ +   ++p  +++L 
   mKIAA0400   321    TERNGNLYKKSdgiRkVWQKRKCSVKNGFLTISHGTanRPPAKLNLL 367  

                   gcsvre.p....cFeivt.drtlllqAeseeereeWvealqsaiaka<-*
                   +c+v+ +p++++cF ++++drt+++qAe+e+e++ W++ lq+  ++a   
   mKIAA0400   368 TCQVKTnPeekkCFDLIShDRTYHFQAEDEQECQIWMSVLQNSKEEA    414  

ArfGap: domain 1 of 1, from 436 to 556: score 104.0, E = 1.7e-26
                   *->eealqlLRsikpgNkkCfDCGavpnPtWaSvnlGvflCieCSGiHRs
                      +e + ++++++ gN +C+DCGa p+PtW S nlG++ CieCSGiHR 
   mKIAA0400   436    KEIISEVQRMT-GNDVCCDCGA-PDPTWLSTNLGILTCIECSGIHRE 480  

                   LfGvHiSkVnvRSltLDtWteeeLrllesckgGNenansfwesnlddfsl
                   L GvH S+    SltLD     eL l +  ++GN ++n++ e  l+ ++ 
   mKIAA0400   481 L-GVHYSRM--QSLTLDVLGTSELLLAK--NIGNAGFNEIMECCLPSEDP 525  

                   kpkdsdaaasvKCeddrqkyesfiaaKYeeklfrvdkesaee<-*
                    +++++        +d   ++ +i aKY e++    ++++ +   
   mKIAA0400   526 VKPNPG--------SDMIARKDYITAKYMERRY---ARKKHA    556  

ANK: domain 1 of 3, from 599 to 631: score 18.3, E = 1.1
                   *->dGrTpLHlAaen...gnlevvklLldkgadina<-*
                       + T+LHlA+++ ++ +l++v +L+++++++++   
   mKIAA0400   599    PDETALHLAVRSvdrTSLHIVDFLVQNSGNLDK    631  

ANK: domain 2 of 3, from 635 to 664: score 32.2, E = 6.9e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G T+LH+++ ++n e++klLl+ +a+i++   
   mKIAA0400   635    KGSTALHYCCLTDNAECLKLLLRGKASIEI    664  

ANK: domain 3 of 3, from 668 to 698: score 1.9, E = 2.6e+03
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                       G TpL +A + +++++ +lL ++  + +n    
   mKIAA0400   668    SGETPLDIAKRLKHEHCEELLTQALSgRFNS    698  

SH3: domain 1 of 1, from 911 to 969: score 68.7, E = 7.2e-16
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnr.tGke
                      ++v+AlY++ a+n+dEL+F++GD+i+v  ++d++Ww G ++++  ++
   mKIAA0400   911    KRVKALYNCVADNPDELTFSEGDVIIVDGEEDQEWWIGHIDGePSRK 957  

                   GlfPsnYVeeie<-*
                   G fP ++V  i    
   mKIAA0400   958 GAFPVSFVHFIA    969  

//