hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj04247/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0400 ( 970 res) mfj04247 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ArfGap Putative GTPase activating protein for Arf 104.4 2.1e-27 1 PH PH domain 69.4 7.7e-17 1 Ank Ankyrin repeat 45.8 9.8e-10 2 SH3_1 SH3 domain 45.3 1.3e-09 1 SH3_2 Variant SH3 domain 25.7 0.0011 1 DUF827 Plant protein of unknown function (DUF827) -116.8 0.65 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DUF827 1/1 90 289 .. 1 551 [] -116.8 0.65 PH 1/1 321 412 .. 1 92 [] 69.4 7.7e-17 ArfGap 1/1 436 558 .. 1 137 [] 104.4 2.1e-27 Ank 1/2 599 634 .. 1 33 [] 16.7 0.54 Ank 2/2 635 667 .. 1 33 [] 29.2 9.8e-05 SH3_1 1/1 911 968 .. 1 58 [] 45.3 1.3e-09 SH3_2 1/1 912 968 .. 1 69 [] 25.7 0.0011 Alignments of top-scoring domains: DUF827: domain 1 of 1, from 90 to 289: score -116.8, E = 0.65 *->sAPFeSVKEAVtlFGgiafWKahyatRLkklqsserrktvsfedVsd A +FGg + + mKIAA0400 90 ---------ALEKFGGNCVCRDD------------------------ 103 eetELekvqkeapelKkeLenaEreklqVLkELEsTKrtveeLklkLEka +L+s Lk ++ mKIAA0400 104 ------------------------------PDLGS-----AFLKFSV--- 115 ekeeqqAkqdsElAklRvEEmEqGiadeASVaaktqlEVAkEryisatsE t+E mKIAA0400 116 ----------------------------------------------FTKE 119 LdsvKeELekvrqeynslleEKdlAlkrAEEAvlaskvvekkveeLtkEl L + +K l mKIAA0400 120 LTAL----------------FKNL-------------------------- 127 iAtKeslEsahaaHleAeEerigiamekdqdreayekelkeAeeeLqrLn +q n mKIAA0400 128 ---------------------------------------------IQNMN 132 q....eldpELkkDlkakLdeasaeledLkeElaaykeSkikeEaeviee + + ld+ mKIAA0400 133 NiisfPLDS----------------------------------------- 141 egeiaaqesshdimssvasitkELeeAKmnLeKaaeEekslrslveSLkq ++ +L+ +K++L+K k + ++ mKIAA0400 142 ------------------LLKGDLKGVKGDLKKPF--DKAWKDYETKIT- 170 ELeeeKaeleelrqREgeasiavaSLeaELsRtksEIelvkskEkearE. + e+eK+e+ +l g+ ++ EI + + E+ +E+ mKIAA0400 171 KIEKEKKEHAKLH---GM--------------IRTEISGAEIAEEMEKEr 203 ....ekmvElpkklqqasrEAeeaKkeAenareelrkakeEaEqaktals + + m E ++k+++++ ++ ++ ++ +++ mKIAA0400 204 rffqLQMCEYLLKVNEIKVK------------KGVDLLQNLIKYFHAQCN 241 taEkrLvaArKeiEaAKaaEklAiaeIKaLqeseesqkndeiesSprsIt + L+ A++ +K mKIAA0400 242 FFQDGLK---------------AVESLK---------------------- 254 isleEyeeLskraeEaEelvnfrvaealaqvEeakeseseiLeKLEeaek ++ +++ +++ ++k ++e e+ + mKIAA0400 255 ---------------------PSIETLSTDLHTIKQAQDE--ER-----R 276 eieekKaaleeAl<-* + ++++ l+ Al mKIAA0400 277 QLIQLRDILKSAL 289 PH: domain 1 of 1, from 321 to 412: score 69.4, E = 7.7e-17 *->vikeGwLlkkg..gkkswkkRyfvLfndvLlyykdkkkkpkgsipLs ++ G L+kk+++ +k w+kR + ++n+ L + +p +++L mKIAA0400 321 TERNGNLYKKSdgIRKVWQKRKCSVKNGFLTISHGTANRPPAKLNLL 367 giqvekvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair<- ++qv++ p+ +k cF ++++dr t+++qae+e+e++ W++ +q++ + mKIAA0400 368 TCQVKTNPE--EKKCFDLIShDR-TYHFQAEDEQECQIWMSVLQNSKE 412 * mKIAA0400 - - ArfGap: domain 1 of 1, from 436 to 558: score 104.4, E = 2.1e-27 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn ++ + ++++ gN +C+DCga p+PtW S nlG++ CieCSGiHR mKIAA0400 436 KEIISEVQRMT-GNDVCCDCGA-PDPTWLSTNLGILTCIECSGIHRE 480 LfGvHiSkVnvRSltLDsWtpeeLrklesckgGNenansfwEsnlddfsl L GvH S+ SltLD eL + + ++GN+++n++ E l+ + mKIAA0400 481 L-GVHYSRM--QSLTLDVLGTSELLLAK--NIGNAGFNEIMECCLPSEDP 525 kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-* ++++ +d ++ +i aKY e+++ k + mKIAA0400 526 VKPNPG-------SDMIARKDYITAKYMERRYARKKHADT 558 Ank: domain 1 of 2, from 599 to 634: score 16.7, E = 0.54 *->dGfTPLHlAalrg...nlevvklLlsqGAdlnaqdd<-* +T+LHlA+++ + +l +v +L+++ +l+ q+ mKIAA0400 599 PDETALHLAVRSVdrtSLHIVDFLVQNSGNLDKQTG 634 Ank: domain 2 of 2, from 635 to 667: score 29.2, E = 9.8e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G T+LH+ +l +n+e++klLl A++ + + mKIAA0400 635 KGSTALHYCCLTDNAECLKLLLRGKASIEIANE 667 SH3_1: domain 1 of 1, from 911 to 968: score 45.3, E = 1.3e-09 *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkgrlkgtgG.. k+v+ALY +a ++dEL+F +GDvi+v ++d +WW g + G++ mKIAA0400 911 KRVKALYNCVADNPDELTFSEGDVIIVDGEEDQEWWIGHID---Gep 954 .keGliPsNYVepv<-* +++G +P+++V + mKIAA0400 955 sRKGAFPVSFVHFI 968 SH3_2: domain 1 of 1, from 912 to 968: score 25.7, E = 0.0011 *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl +++a+ ++va +++e L++ +Gdv+ v +++d +ww mKIAA0400 912 RVKALYNCVA-DNPDE------LTFSEGDVIIVD----GEEDQEWWI 947 geslggGrr.rRGlvPssaveel<-* g +G+ +r G +P s+v + mKIAA0400 948 GHI--DGEPsRKGAFPVSFVHFI 968 //