hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06355/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0397  ( 1032 res)   mbg06355

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      Domain in Tre-2, BUB2p, and Cdc16p. Probable   128.3    8.2e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1     590   992 ..     1   310 []   128.3  8.2e-34

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 590 to 992: score 128.3, E = 8.2e-34
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                      +++Gv +++R++VW++Ll++++   s+ e+ q +++           
   mKIAA0397   590    YYGGVEHEIRKDVWPFLLGHYKFGMSKKEMEQVDTA----------- 625  

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                       +Y++ l +++ +++                               +
   mKIAA0397   626 -VAARYQQVLAEWKACEVV------------------------------V 644  

                   dqIekDlkRTfpelsfFqfrsrd.nqk.......................
                    q e+  +   +   f   +s+d++  +  +++++ +++   + ++ +++
   mKIAA0397   645 RQREREAH-PATLTKFSSGSSIDsHVQrlvhrdstisndvfisvddleps 693  

                   ..................................................
                   ++++ ++++++++++++ ++++    ++++ + ++++++ +++++ +  +
   mKIAA0397   694 gpqdledskpkreqepgagtpgiaaaeqqsvefdspdsglpssrnysvas 743  

                   ..................................................
                   + +++ ++ ++ + ++++ ++++++++ +  ++ ++++++++++  + ++
   mKIAA0397   744 giqssldeaqsvgfeddgagedgsegpataahtfpgphdpgqetlapase 793  

                   ...................................evll.d.dengpgqe
                    + +++         + +  ++   + ++ +++ ++ + +       ++e
   mKIAA0397   794 leagqelaavcaaaytielldtvalnlhridkdvqRCDRnYwYFTTSNLE 843  

                   sLrrvLkaYslynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkL
                   +Lr+++  Y + + +   gY+QGm++l+apLL+ ++  +++ A+ cf++L
   mKIAA0397   844 RLRDIMCSYVWEHLD--MGYVQGMCDLLAPLLVILD--NDQLAYSCFSHL 889  

                   merylpnflfkdtnnfytpdlsglqadqlvldslleeylPeLykHLqeqd
                   m+r+++nf+          +   ++  + +++sl+++ + eL++ + ++ 
   mKIAA0397   890 MKRMGQNFP----------SGGAMDSHFANMRSLIQILDSELFELMHQN- 928  

                   kqskkkhvdkleidpslyalrWfLtlFarelPledvlRiwDvlfaellrl
                              + +   +++rWfL+ F+rel +edv+ +w+v++a    +
   mKIAA0397   929 ----------GDYTHFYFCYRWFLLDFKRELLYEDVFAVWEVIWAARRIS 968  

                   gseflfkialaiLklnedkllkld<-*
                   +++f+++iala++  +++++ +++   
   mKIAA0397   969 SEHFVLFIALALVEAYREIIRDNN    992  

//