hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06355/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0397  ( 1032 res)   mbg06355

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RUN      RUN domain                                     174.0    2.4e-48   1
TBC      TBC domain                                     -44.0     0.0012   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RUN        1/1      69   216 ..     1   174 []   174.0  2.4e-48
TBC        1/1     794   991 ..     1   219 []   -44.0   0.0012

Alignments of top-scoring domains:
RUN: domain 1 of 1, from 69 to 216: score 174.0, E = 2.4e-48
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +LC+a+eA+l+H+L+r                        +a+++l+
   mKIAA0397    69    ALCGAVEACLLHQLRR------------------------RAAGFLR 91   

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLae..KrSs
                   s++     +++l      +++++k++pvae ++h+v++++q+ae++K+S+
   mKIAA0397    92 SDK-----MAAL------FTKVGKTCPVAEDICHKVQELQQQAEgrKPSG 130  

                   viktavgrgR..............KyAWiRlaLneksLssylklLlsdee
                    +++a+ ++ +++++ +  +++  K++W+R+aL+ek+L++ +++L+++++
   mKIAA0397   131 GSQEALRKQGstggkapalspqalKHIWVRTALMEKVLDRVVQYLAENCS 180  

                   llrkyYkpnAlLrdpSdeegCeillslLqgLsaldFsLdlkfe<-*
                      kyY+++AlL+dp  ++g  il++lL+g++al+++ +lk++   
   mKIAA0397   181 ---KYYEKEALLADP--VFG-PILACLLVGPCALEYT-KLKTA    216  

TBC: domain 1 of 1, from 794 to 991: score -44.0, E = 0.0012
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd
                         G  +       avc  Ay            ll   +        
   mKIAA0397   794    LEAGQELA------AVCAAAYTIE---------LLDTVALNLHR--- 822  

                   kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV
                    I+kDv+R    +  F +        +Lr +   Y+w   d gY+QGM  
   mKIAA0397   823 -IDKDVQRCDRNYWYFTTS----NLERLRDIMCSYVWEHLDMGYVQGMCD 867  

                   vaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLdsfv
                   + Ap+L++      A+ ++  L+       + +   + ++     + s +
   mKIAA0397   868 LLAPLLVILDNDQLAYSCFSHLMKRMGQN-FPSGGAMDSHFAN--MRSLI 914  

                   eellprLYeYLlskgvdlkvv.sLpwfLsLyattlPleeAlrIfDiLFad
                     l+ +L+e + + g     +    wfL  +   l  e  + ++    a 
   mKIAA0397   915 QILDSELFELMHQNGDYTHFYfCYRWFLLDFKRELLYEDVFAVWEVIWAA 964  

                   ....GivllfrvaLAvLkilkeqiLda<-*
                   ++ +  +  + +aLA    ++e i d    
   mKIAA0397   965 rrisSEHFVLFIALALVEAYREIIRDN    991  

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