hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02345/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0396  ( 474 res)   mbg02345

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ANK      ankyrin repeats                                 82.9    3.8e-20   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ANK        1/5       1    29 [.     1    30 []    26.9   0.0027
ANK        2/5      33    62 ..     1    30 []    22.2    0.075
ANK        3/5      65    93 ..     1    30 []    21.5     0.12
ANK        4/5     330   374 ..     1    30 []    13.5       31
ANK        5/5     378   417 ..     1    30 []     4.8  1.1e+03

Alignments of top-scoring domains:
ANK: domain 1 of 5, from 1 to 29: score 26.9, E = 0.0027
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       ++T+L++Aa++g+ +vv++Ll+  ad+na   
   mKIAA0396     1    -DNTCLMIAAYKGHTDVVRYLLEQRADPNA    29   

ANK: domain 2 of 5, from 33 to 62: score 22.2, E = 0.075
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G T+LH Aae g++++vk+L++  a i +   
   mKIAA0396    33    CGATALHFAAEAGHIDIVKELIKWRAAIVV    62   

ANK: domain 3 of 5, from 65 to 93: score 21.5, E = 0.12
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+TpL +Aae+   +vv+lLl++  d++    
   mKIAA0396    65    HGMTPLKVAAESCKADVVELLLSHA-DCDR    93   

ANK: domain 4 of 5, from 330 to 374: score 13.5, E = 31
                   *->dGrTpLHlAaen...............gnlevvklLldkgadina<-
                      +G++ LHlA+ ++++ ++ ++++  +  n  v klLld ga++na  
   mKIAA0396   330    EGFSLLHLAVNSntpvddfhtndvcsfPNALVTKLLLDCGAEVNA   374  

                   *
                    
   mKIAA0396     -   -    

ANK: domain 5 of 5, from 378 to 417: score 4.8, E = 1.1e+03
                   *->dGrTpLHlAaen........gnlevvklLldkga..dina<-*
                      +G+++LH+ ++++++ ++    ++++  L+++ga++d++    
   mKIAA0396   378    EGNSALHIIVQYnrpisdflTLHSIIISLVEAGAhtDMTN    417  

//