hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02345/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0396  ( 474 res)   mbg02345

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                 120.0    4.4e-32   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/5       1    32 [.     1    33 []    31.0  2.7e-05
Ank        2/5      33    64 ..     1    33 []    18.0     0.23
Ank        3/5      65    96 ..     1    33 []    23.3   0.0057
Ank        4/5     330   377 ..     1    33 []    36.8  4.9e-07
Ank        5/5     378   418 ..     1    33 []    17.5     0.32

Alignments of top-scoring domains:
Ank: domain 1 of 5, from 1 to 32: score 31.0, E = 2.7e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                        +T+L++Aa++g+++vv++Ll+q Ad+na+     
   mKIAA0396     1    -DNTCLMIAAYKGHTDVVRYLLEQRADPNAKAH    32   

Ank: domain 2 of 5, from 33 to 64: score 18.0, E = 0.23
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G T+LH Aa+ g++++vk+L++      +++    
   mKIAA0396    33    CGATALHFAAEAGHIDIVKELIK-WRAAIVVNG    64   

Ank: domain 3 of 5, from 65 to 96: score 23.3, E = 0.0057
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+TPL +Aa++  ++vv+lLls  Ad + + +   
   mKIAA0396    65    HGMTPLKVAAESCKADVVELLLS-HADCDRRSR    96   

Ank: domain 4 of 5, from 330 to 377: score 36.8, E = 4.9e-07
                   *->dGfTPLHlAalrg...............nlevvklLlsqGAdlnaqd
                      +Gf+ LHlA+ ++ + ++ + ++  + +n+ v klLl++GA++na+d
   mKIAA0396   330    EGFSLLHLAVNSNtpvddfhtndvcsfpNALVTKLLLDCGAEVNAVD 376  

                   d<-*
                   +   
   mKIAA0396   377 N    377  

Ank: domain 5 of 5, from 378 to 418: score 17.5, E = 0.32
                   *->dGfTPLHlAalrg........nlevvklLlsqGAdlnaqdd<-*
                      +G+++LH+ ++++ + ++    ++++  L+++GA  +++++   
   mKIAA0396   378    EGNSALHIIVQYNrpisdfltLHSIIISLVEAGAHTDMTNK    418  

//