hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00290/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0394  ( 351 res)   mbj00290

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FCH      Fes/CIP4 homology domain                        97.4    1.7e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FCH        1/1      85   171 ..     1   103 []    97.4  1.7e-24

Alignments of top-scoring domains:
FCH: domain 1 of 1, from 85 to 171: score 97.4, E = 1.7e-24
                   *->mgfwselwsddGfeaLlsrlknglrlledlkkflreRakiEeeYAkk
                      + +++ +  ++Gfe Ll+ +  g+++ +++ +f+reR+kiEeeYAk+
   mKIAA0394    85    DPQGNGT--VAGFELLLQKQLKGKQMQKEMSEFIRERIKIEEEYAKN 129  

                   Lqklskkyfnkkssvgdlravreteselgslkkswevllsetdalakshl
                   L+kls              +++   +e+gsl+++w++++ +++++a++hl
   mKIAA0394   130 LAKLS--------------QNSLAAQEEGSLGEAWAQVKKSLADEAEVHL 165  

                   qlsedL<-*
                   ++s +L   
   mKIAA0394   166 KFSAKL    171  

//