hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00290/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0394  ( 351 res)   mbj00290

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FCH      Fes/CIP4 homology domain                        93.8    3.4e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FCH        1/1      77   171 ..     1   107 []    93.8  3.4e-24

Alignments of top-scoring domains:
FCH: domain 1 of 1, from 77 to 171: score 93.8, E = 3.4e-24
                   *->dgFwselns......ddgykaLlkrlddglrlledlkkFlreRakiE
                      d+Fw++ ++++++++++g++ Ll+++ +g+++ +++ +F+reR+kiE
   mKIAA0394    77    DYFWADKKDpqgngtVAGFELLLQKQLKGKQMQKEMSEFIRERIKIE 123  

                   eeYAkkLqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvlls
                   eeYAk+L+kls++                + +++++   +  +aw++++ 
   mKIAA0394   124 EEYAKNLAKLSQN----------------SLAAQEEGSLG--EAWAQVKK 155  

                   etdqlsklHsqlseqL<-*
                    + +++++H+++s+ L   
   mKIAA0394   156 SLADEAEVHLKFSAKL    171  

//