hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg13346/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0393  ( 1871 res)   mbg13346

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HECTc    Domain Homologous to E6-AP Carboxyl Terminus   222.4    3.9e-62   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HECTc      1/1    1490  1836 ..     1   407 []   222.4  3.9e-62

Alignments of top-scoring domains:
HECTc: domain 1 of 1, from 1490 to 1836: score 222.4, E = 3.9e-62
                   *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske
                       +spd L  +  ++++++f      vgE+  D GG   E++++++ e
   mKIAA0393  1490    SFSPDSLLLP-HRVWKVKF------VGESVDDCGGGYSESIAEICEE 1529 

                   lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav
                   l+n     L++ +pn + e       g +r++   nP+ ++  + h++  
   mKIAA0393  1530 LQNG-LTPLLIVTPNGRDE------SGANRDCYLLNPATRA--PVHCS-- 1568 

                   yFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDleslDP
                   +Frf+G++lG+A++ +  l l +a p++K+L g++    +t  Dl+++D 
   mKIAA0393  1569 MFRFLGVLLGIAIRTGSPLSLNLAEPVWKQLAGMS----LTIADLSEVDK 1614 

                   elyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsivles
                    +  +L +++               + + + +++e  +   L F +v   
   mKIAA0393  1615 DFIPGLMYIR---------------DNEATSEEFEA-MS--LPF-TVPSA 1645 

                   dfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAFreG
                       ++++ L    + + +T +N+ EYV+l+i+y + ++ ++q++A+reG
   mKIAA0393  1646 ---SGQDIQLSS--KHTHITLDNRAEYVRLAINY-RLHEFDEQVAAVREG 1689 

                   FseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYtensq
                   + +V+p  lL+ lF+  ELe ++cG++ +i +  Lks+++y+ g     +
   mKIAA0393  1690 MARVVPVPLLS-LFTGYELETMVCGSP-DIPLHLLKSVATYK-GIEPSAS 1736 

                   tirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaLspsNGpq
                    +   +wFWev+esF+n er ++L+FV G+ rlP     +a+ ++    +
   mKIAA0393  1737 LV---QWFWEVMESFSNTERSLFLRFVWGRTRLP---RTIADFRG----R 1776 

                   kFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKLLlAIneg
                    F I++ +     +d +LP + TCf++LkLP Ys k++L+eKL +AI  +
   mKIAA0393  1777 DFVIQVLDK-YNPPDHFLPESYTCFFLLKLPRYSCKQVLEEKLKYAIHFC 1825 

                   R.iggeGFgls<-*
                    +i+++ +      
   mKIAA0393  1826 KsIDTDDYARI    1836 

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