hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg13346/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0393 ( 1871 res) mbg13346 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RCC1 Regulator of chromosome condensation (RCC1) 334.2 1.4e-96 13 HECT HECT-domain (ubiquitin-transferase) 236.1 5e-67 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RCC1 1/13 46 98 .. 1 68 [] 32.4 1e-05 RCC1 2/13 101 150 .. 1 68 [] 32.6 9e-06 RCC1 3/13 153 204 .. 1 68 [] 33.5 4.7e-06 RCC1 4/13 207 256 .. 1 68 [] 46.0 8.5e-10 RCC1 5/13 259 308 .. 1 68 [] 26.0 0.00088 RCC1 6/13 311 360 .. 1 68 [] 31.0 2.8e-05 RCC1 7/13 988 1037 .. 1 68 [] 8.9 0.51 RCC1 8/13 1040 1091 .. 1 68 [] 21.7 0.017 RCC1 9/13 1094 1143 .. 1 68 [] 31.9 1.4e-05 RCC1 10/13 1146 1197 .. 1 68 [] 20.3 0.03 RCC1 11/13 1200 1249 .. 1 68 [] 35.5 1.2e-06 RCC1 12/13 1252 1301 .. 1 68 [] 27.6 0.0003 RCC1 13/13 1304 1353 .. 1 68 [] 35.0 1.8e-06 HECT 1/1 1524 1827 .. 1 366 [] 236.1 5e-67 Alignments of top-scoring domains: RCC1: domain 1 of 13, from 46 to 98: score 32.4, E = 1e-05 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G+VYs G ++nG+LGlg + +P ++ mKIAA0393 46 EGKVYSCGE--ATNGRLGLGMSSGTVP----------IPRQI---TA 77 ssslsekVvsvasGgqHtval<-* ss +k v v sGg H +al mKIAA0393 78 LSSYVVKKVAVHSGGRHATAL 98 RCC1: domain 2 of 13, from 101 to 150: score 32.6, E = 9e-06 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr dG+V+s+G g+ G LG + + +P l+ mKIAA0393 101 DGKVFSWGE--GDDGKLGHFSRMNCD-----------KPRLI----- 129 ssslsekVvsvasGgqHtval<-* + + a+G +H +al mKIAA0393 130 EALKTKRIRDIACGSSHSAAL 150 RCC1: domain 3 of 13, from 153 to 204: score 33.5, E = 4.7e-06 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G +Y++G+ ge+G+LG g + +P+ v mKIAA0393 153 SGELYTWGL--GEYGRLGHGDNTTQL-----------KPKMV----- 181 ssslsekVvsvasG..gqHtval<-* + l +V +va+G+++ t al mKIAA0393 182 KVLLGHRVIQVACGsrDAQTLAL 204 RCC1: domain 4 of 13, from 207 to 256: score 46.0, E = 8.5e-10 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G V+s+G g+ G LG+g+++ ++ +P+++ mKIAA0393 207 EGLVFSWGD--GDFGKLGRGGSEGCN-----------IPQNI----- 235 ssslsekVvsvasGgqHtval<-* + V + ++G+q+ al mKIAA0393 236 ERLNGQGVCQIECGAQFSLAL 256 RCC1: domain 5 of 13, from 259 to 308: score 26.0, E = 0.00088 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G V ++G g++ +LG g +v + +P+ v mKIAA0393 259 SGVVWTWGK--GDYFRLGHGSDVHVR-----------KPQVV----- 287 ssslsekVvsvasGgqHtval<-* + k v va G+ H a+ mKIAA0393 288 EGLRGKKIVHVAVGALHCLAV 308 RCC1: domain 6 of 13, from 311 to 360: score 31.0, E = 2.8e-05 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G+VY++G ++ Gq G g++ + +P+lv mKIAA0393 311 SGQVYAWGD--NDHGQQGNGTTTVNR-----------KPTLV----- 339 ssslsekVvsvasGgqHtval<-* + k va+G +H va mKIAA0393 340 QGLEGQKITRVACGSSHSVAW 360 RCC1: domain 7 of 13, from 988 to 1037: score 8.9, E = 0.51 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G +Y++G + GqLG e+++ + vP+ mKIAA0393 988 SGTIYGWGH--NHRGQLGGIEGAKVK-----------VPTPC----- 1016 ssslsekVvsvasGgqHtval<-* + v+ G q ++a+ mKIAA0393 1017 EALATLRPVQLIGGEQTLFAV 1037 RCC1: domain 8 of 13, from 1040 to 1091: score 21.7, E = 0.017 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr dG++Y+ G g G+LG g++++ s P+l+ mKIAA0393 1040 DGKLYATGY--GAGGRLGIGGTESVS-----------TPTLL----- 1068 ssslsekV...vsvasGgqHtval<-* s++ ++ ++v v sGg H al mKIAA0393 1069 -ESIQHVFikkVAVNSGGKHCLAL 1091 RCC1: domain 9 of 13, from 1094 to 1143: score 31.9, E = 1.4e-05 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G VYs+G + G LG g + + P + mKIAA0393 1094 EGEVYSWGE--AKDGKLGHGNRSPCDR-----------PRVI----- 1122 ssslsekVvsvasGgqHtval<-* s + Vv+va+Gg H +++ mKIAA0393 1123 ESLRGIEVVDVAAGGAHSACV 1143 RCC1: domain 10 of 13, from 1146 to 1197: score 20.3, E = 0.03 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr G++Y++G g +G+LG +++ +P+lv mKIAA0393 1146 AGDLYTWGK--GRYGRLGHSDSEDQL-----------KPKLV----- 1174 ssslsekVvsvas..GgqHtval<-* +V + a+++G+ t +l mKIAA0393 1175 EALQGHRVIDIACgsGDAQTLCL 1197 RCC1: domain 11 of 13, from 1200 to 1249: score 35.5, E = 1.2e-06 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr d V s+G g++G LG+g++ ++ vP ++ mKIAA0393 1200 DDTVWSWGD--GDYGKLGRGGSDGCK-----------VPMKI----- 1228 ssslsekVvsvasGgqHtval<-* s Vv+v++G q+ val mKIAA0393 1229 DSLTGLGVVKVECGSQFSVAL 1249 RCC1: domain 12 of 13, from 1252 to 1301: score 27.6, E = 0.0003 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G VY++G g++++LG g + ++ P +v mKIAA0393 1252 SGAVYTWGK--GDYHRLGHGSDDHVRR-----------PRQV----- 1280 ssslsekVvsvasGgqHtval<-* kV a G H v++ mKIAA0393 1281 QGLQGKKVIAIATGSLHCVCC 1301 RCC1: domain 13 of 13, from 1304 to 1353: score 35.0, E = 1.8e-06 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr dG VY++G +++GqLG g++ + P lv mKIAA0393 1304 DGEVYTWGD--NDEGQLGDGTTNAIQR-----------PRLV----- 1332 ssslsekVvsvasGgqHtval<-* kV va+G Ht a mKIAA0393 1333 AALQGKKVNRVACGSAHTLAW 1353 HECT: domain 1 of 1, from 1524 to 1827: score 236.1, E = 5e-67 *->tLlsrelfnPdygLFeysd.n.seakseeddsysgyvedsytlfpnP ++ el+n L + ++n+++++ + +++++ nP mKIAA0393 1524 AEICEELQNGLTPLLI-VTpNgRDES----------GANRDCYLLNP 1559 lsgesnpehervlkyFkflGrilGlAlydgrllDlpFsraFyKklLmagk + + ++ +F+flG++lG+A++ g +l+l+++ +++K+l g mKIAA0393 1560 ATRAPVHCS-----MFRFLGVLLGIAIRTGSPLSLNLAEPVWKQLA--GM 1602 psigivtleDlesvDPelynSLkwllendgdKkIedsLLgsledveedLe + +t++Dl +vD ++ +L+++++n+ + + e ++ mKIAA0393 1603 S----LTIADLSEVDKDFIPGLMYIRDNEAT-----------SEEFEAMS 1637 LtFsveeessvgfeadarffGgtktveELkPnGrnipVTneNkeeYvely L F+v+ s G+ + +++ T +N+ eYv+l mKIAA0393 1638 LPFTVPSAS-----------GQDIQLS-----SKHTHITLDNRAEYVRLA 1671 vdyrLnkgiekQfeAFrkGFsevipsrlLslFdpeELelLicGspeeiDv ++yrL +Q+ A r+G+ +v+p lLslF+ +ELe+++cGsp +i + mKIAA0393 1672 INYRL-HEFDEQVAAVREGMARVVPVPLLSLFTGYELETMVCGSP-DIPL 1719 ddLkenTeYdggYtedsplktiqwFWevleeftneeraklLqFvTGssRl + Lk++++Y+ g ++ +qwFWev+e+f+n er ++L+Fv G Rl mKIAA0393 1720 HLLKSVATYK-GIEPSAS--LVQWFWEVMESFSNTERSLFLRFVWGRTRL 1766 PvgGFkaLqgGsnGpPkFtIvrke.gggdddrLPtAhTCFNrLkLPpYsS P + + F I+ ++ ++d +LP + TCF++LkLP Ys mKIAA0393 1767 PRTIADFRG------RDFVIQVLDkYNPPDHFLPESYTCFFLLKLPRYSC 1810 keiLrekLllAInEgseGFgle<-* k++L+ekL++AI+ F + mKIAA0393 1811 KQVLEEKLKYAIH-----FCKS 1827 //