hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01388/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0390  ( 1303 res)   mbh01388

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    177.1    1.8e-48  10

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/10    131   153 ..     1    23 []    24.8    0.012
ZnF_C2H2   2/10    159   181 ..     1    23 []    27.4   0.0019
ZnF_C2H2   3/10    275   298 ..     1    23 []    23.8    0.024
ZnF_C2H2   4/10    301   324 ..     1    23 []    21.8    0.096
ZnF_C2H2   5/10    346   368 ..     1    23 []    28.7   0.0008
ZnF_C2H2   6/10    374   396 ..     1    23 []    23.5    0.029
ZnF_C2H2   7/10    632   654 ..     1    23 []    22.4    0.065
ZnF_C2H2   8/10    754   776 ..     1    23 []    24.4    0.016
ZnF_C2H2   9/10    782   804 ..     1    23 []    24.4    0.016
ZnF_C2H2  10/10   1003  1026 ..     1    23 []    13.0       11

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 10, from 131 to 153: score 24.8, E = 0.012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y Cp+ Cgk+f+  + L  Hmr+H   
   mKIAA0390   131    YPCPL-CGKRFRFNsILSLHMRTH    153  

ZnF_C2H2: domain 2 of 10, from 159 to 181: score 27.4, E = 0.0019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kCp+ C+ +  +k++Lk H+r+H   
   mKIAA0390   159    FKCPY-CDHRAAQKgNLKIHLRTH    181  

ZnF_C2H2: domain 3 of 10, from 275 to 298: score 23.8, E = 0.024
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C++ C+ +f+ +++L rH+r  H   
   mKIAA0390   275    FRCTF-CKGKFKKReELDRHIRiLH    298  

ZnF_C2H2: domain 4 of 10, from 301 to 324: score 21.8, E = 0.096
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ykC++ C++  s++++L+ H+ + H   
   mKIAA0390   301    YKCTL-CDFAASQEeELISHVEkAH    324  

ZnF_C2H2: domain 5 of 10, from 346 to 368: score 28.7, E = 0.0008
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cg++fs++  Lk Hmr+H   
   mKIAA0390   346    FRCEV-CGQVFSQAwFLKGHMRKH    368  

ZnF_C2H2: domain 6 of 10, from 374 to 396: score 23.5, E = 0.029
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+i Cg++f+ +  Lk+Hm+vH   
   mKIAA0390   374    HCCQI-CGRRFKEPwFLKNHMKVH    396  

ZnF_C2H2: domain 7 of 10, from 632 to 654: score 22.4, E = 0.065
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +Cp  Cg++f+++++ + H rvH   
   mKIAA0390   632    TECPD-CGRVFRTYhQVVVHSRVH    654  

ZnF_C2H2: domain 8 of 10, from 754 to 776: score 24.4, E = 0.016
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        Cp+ Cgk+f++ ++Lk H+r+H   
   mKIAA0390   754    KDCPY-CGKTFRTShHLKVHLRIH    776  

ZnF_C2H2: domain 9 of 10, from 782 to 804: score 24.4, E = 0.016
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykCp+ C++  ++  +Lk H+ +H   
   mKIAA0390   782    YKCPH-CDYAGTQSaSLKYHLERH    804  

ZnF_C2H2: domain 10 of 10, from 1003 to 1026: score 13.0, E = 11
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + C + C +++ss + +  H++  H   
   mKIAA0390  1003    HGCLF-CAFTTSSMeLMALHLQaNH    1026 

	[output cut off at A = 10 top alignments]
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