hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01388/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0390  ( 1303 res)   mbh01388

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         182.0    9.5e-51  10

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/10    131   153 ..     1    24 []    28.9  0.00012
zf-C2H2    2/10    159   181 ..     1    24 []    29.4  8.1e-05
zf-C2H2    3/10    275   298 ..     1    24 []    23.2   0.0059
zf-C2H2    4/10    301   324 ..     1    24 []    18.1     0.21
zf-C2H2    5/10    346   368 ..     1    24 []    29.7  6.6e-05
zf-C2H2    6/10    374   396 ..     1    24 []    23.9   0.0038
zf-C2H2    7/10    632   654 ..     1    24 []    22.8   0.0082
zf-C2H2    8/10    754   776 ..     1    24 []    30.0  5.5e-05
zf-C2H2    9/10    782   804 ..     1    24 []    25.1   0.0016
zf-C2H2   10/10   1003  1026 ..     1    24 []     6.2       25

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 10, from 131 to 153: score 28.9, E = 0.00012
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y Cp  Cgk+F+ +s L  H+rtH   
   mKIAA0390   131    YPCP-LCGKRFRFNSILSLHMRTH    153  

zf-C2H2: domain 2 of 10, from 159 to 181: score 29.4, E = 8.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kCp +C+ +  +k+nLk HlrtH   
   mKIAA0390   159    FKCP-YCDHRAAQKGNLKIHLRTH    181  

zf-C2H2: domain 3 of 10, from 275 to 298: score 23.2, E = 0.0059
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ++C+  C+ +F+ +++L rH+r+ H   
   mKIAA0390   275    FRCT-FCKGKFKKREELDRHIRIlH    298  

zf-C2H2: domain 4 of 10, from 301 to 324: score 18.1, E = 0.21
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ykC+  C+ + s+ ++L +H  + H   
   mKIAA0390   301    YKCT-LCDFAASQEEELISHVEKaH    324  

zf-C2H2: domain 5 of 10, from 346 to 368: score 29.7, E = 6.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cg++Fs+   Lk H+r+H   
   mKIAA0390   346    FRCE-VCGQVFSQAWFLKGHMRKH    368  

zf-C2H2: domain 6 of 10, from 374 to 396: score 23.9, E = 0.0038
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +Cg++F+ +  Lk+H+++H   
   mKIAA0390   374    HCCQ-ICGRRFKEPWFLKNHMKVH    396  

zf-C2H2: domain 7 of 10, from 632 to 654: score 22.8, E = 0.0082
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +Cp dCg++F++ ++   H r+H   
   mKIAA0390   632    TECP-DCGRVFRTYHQVVVHSRVH    654  

zf-C2H2: domain 8 of 10, from 754 to 776: score 30.0, E = 5.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        Cp +Cgk+F+++++Lk Hlr+H   
   mKIAA0390   754    KDCP-YCGKTFRTSHHLKVHLRIH    776  

zf-C2H2: domain 9 of 10, from 782 to 804: score 25.1, E = 0.0016
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykCp +C+++ +++++Lk Hl +H   
   mKIAA0390   782    YKCP-HCDYAGTQSASLKYHLERH    804  

zf-C2H2: domain 10 of 10, from 1003 to 1026: score 6.2, E = 25
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      + C   C  + s+ + +  Hl+ +H   
   mKIAA0390  1003    HGCL-FCAFTTSSMELMALHLQAnH    1026 

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