hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00510/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0388  ( 758 res)   mbh00510

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SET      SET (Su(var)3-9, Enhancer-of-zeste, Trithora   144.3    1.3e-38   1
SANT     SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding d    30.6    0.00022   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SANT       1/2     146   274 ..     1    53 []     1.2       68
SANT       2/2     441   489 ..     1    53 []    29.3  0.00051
SET        1/1     624   745 ..     1   114 []   144.3  1.3e-38

Alignments of top-scoring domains:
SANT: domain 1 of 2, from 146 to 274: score 1.2, E = 68
                   *->kkgeWteeEdelLleavkkyGkg........................
                       ++e  ee++  ++e+++ y+ + +++++  +++   ++    +  +
   mKIAA0388   146    MGDEVKEEDETFIEELINNYDGKvhgeeemipgsvlisdavflelvd 192  

                   ..................................................
                     ++ ++++++++++++++++++++++ + +++++++  ++++++++++ 
   mKIAA0388   193 alnqysdeeedghndpsdgkqddskedlpvtrkrkrhaiegnkksskkqf 242  

                   .tdndWakIakelp.gRtpkqcrerwrnllkp<-*
                   ++d  +++Ia+++p++  p + +er+r+l ++   
   mKIAA0388   243 pNDMIFSAIASMFPeNGVPDDMKERYRELTEM    274  

SANT: domain 2 of 2, from 441 to 489: score 29.3, E = 0.00051
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                      +  eWt  E+ l++  + +y     n++++Ia+ l+++t+kq+ +++
   mKIAA0388   441    EPVEWTGAEESLFRVFHGTYF----NNFCSIARLLGTKTCKQVFQFA 483  

                   rnllkp<-*
                    +       
   mKIAA0388   484 VKESLI    489  

SET: domain 1 of 1, from 624 to 745: score 144.3, E = 1.3e-38
                   *->aklevfkskgkGwGlratedIpkGefIleyvGeii............
                      ++l +++s+ +GwG + +e+  k+efI ey+Ge+i++++ +++++  
   mKIAA0388   624    KHLLLAPSDVAGWGTFIKESVQKNEFISEYCGELIsqdeadrrgkvy 670  

                   .....fylfd.....ciDatranggkGniarfiNHSCePNcelifvevdg
                   ++  +++lf+ +++ ++Datr    kGn++rf NHS +PNc++++v+v+g
   mKIAA0388   671 dkymsSFLFNlnndfVVDATR----KGNKIRFANHSVNPNCYAKVVMVNG 716  

                   fdprgasdsadprivifAlrdIkpGEELtidYgddyege<-*
                             d+ri+ifA+r I +GEEL++dY ++  ++   
   mKIAA0388   717 ----------DHRIGIFAKRAIQAGEELFFDYRYSQADA    745  

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