hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg07892/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0385 ( 1377 res) mbg07892 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-MYM MYM-type Zinc finger 275.0 9.8e-79 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-MYM 1/9 340 374 .. 1 43 [] 37.4 3.2e-07 zf-MYM 2/9 386 430 .. 1 43 [] 44.5 2.4e-09 zf-MYM 3/9 437 472 .. 1 43 [] 43.0 6.8e-09 zf-MYM 4/9 485 519 .. 1 43 [] 38.9 1.2e-07 zf-MYM 5/9 529 567 .. 1 43 [] 38.6 1.5e-07 zf-MYM 6/9 575 612 .. 1 43 [] 41.6 1.8e-08 zf-MYM 7/9 620 654 .. 1 43 [] 39.5 7.3e-08 zf-MYM 8/9 661 700 .. 1 43 [] 34.8 1.9e-06 zf-MYM 9/9 707 737 .. 1 43 [] 10.4 0.43 Alignments of top-scoring domains: zf-MYM: domain 1 of 9, from 340 to 374: score 37.4, E = 3.2e-07 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* +lFCS+sCl++y++k +++ C++Ckkei+n ++ mKIAA0385 340 QLFCSSSCLTTYSKKPLGRKT--------CTFCKKEIWNTKDS 374 zf-MYM: domain 2 of 9, from 386 to 430: score 44.5, E = 2.4e-09 *->klFCSesClskykrknnvkaglvtkrt..trCsyCkkeisnleel<- ++FC ++Cls y++++ ++ +++ ++++ trCs+C+k++++l+e+ mKIAA0385 386 HEFCTSVCLSLYEAQQQRPIPQSGDPAdaTRCSICQKTGEVLHEV 430 * mKIAA0385 - - zf-MYM: domain 3 of 9, from 437 to 472: score 43.0, E = 6.8e-09 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* ++ CS+sC+sk++++ + k+++ C++C+ +i+ ++ + mKIAA0385 437 HRLCSDSCFSKFRANKGLKTNC-------CDQCGAYIYARPGG 472 zf-MYM: domain 4 of 9, from 485 to 519: score 38.9, E = 1.2e-07 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* k+FC++ Cl++yk++ ++++ + C +Ck++++n+e+l mKIAA0385 485 KRFCNTTCLGAYKKV-GPRVYP-------CVWCKTLCKNFEML 519 zf-MYM: domain 5 of 9, from 529 to 567: score 38.6, E = 1.5e-07 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* lFCS +C ++yk+k++ +g++++ Cs+C++ s ++++ mKIAA0385 529 SLFCSLCCTTSYKVKQAGLTGPPRP----CSFCRRSLSDPCYY 567 zf-MYM: domain 6 of 9, from 575 to 612: score 41.6, E = 1.8e-08 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* +FCS sC++k++++ + g++++ C+yC++++s+++e+ mKIAA0385 575 YQFCSPSCWTKFQHT-SPEGGIHLS----CHYCHSLFSGKPEV 612 zf-MYM: domain 7 of 9, from 620 to 654: score 39.5, E = 7.3e-08 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* ++FC+++C+ +kr +v+ + C++C++e++++e l mKIAA0385 620 FQFCCRDCCEDFKRLRGVVSQ--------CEHCRQEKLLHEKL 654 zf-MYM: domain 8 of 9, from 661 to 700: score 34.8, E = 1.9e-06 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* k FCSe+C yk+++ +k gl++++ C+yC++++ ++++ mKIAA0385 661 KSFCSEGCVLLYKQDFTKKLGLCCIT---CTYCSQTCQRGVTE 700 zf-MYM: domain 9 of 9, from 707 to 737: score 10.4, E = 0.43 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* +FCSe+C +ky +++++ ++ + +++++++ mKIAA0385 707 WDFCSEDCKTKYLLWYCKVRRV------------NRAERRQQG 737 //