hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg07202/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0384 ( 945 res) mbg07202 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ARM Armadillo/beta-catenin-like repeats 133.6 2.1e-35 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ARM 1/7 425 465 .. 1 38 [] 35.7 6.5e-06 ARM 2/7 468 509 .. 1 38 [] 42.2 7.1e-08 ARM 3/7 510 567 .. 1 38 [] 5.1 1.1e+02 ARM 4/7 569 616 .. 1 38 [] 14.7 6.6 ARM 5/7 679 721 .. 1 38 [] 3.1 2.1e+02 ARM 6/7 727 767 .. 1 38 [] 30.1 0.00031 ARM 7/7 817 859 .. 1 38 [] 6.3 79 Alignments of top-scoring domains: ARM: domain 1 of 7, from 425 to 465: score 35.7, E = 6.5e-06 *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-* nd+ k +v++++g+p+Lv LL++++ ev A++aL N+++ mKIAA0384 425 NDKVKTDVRKLKGIPILVGLLdhpKKEVHLGACGALKNISF 465 ARM: domain 2 of 7, from 468 to 509: score 42.2, E = 7.1e-08 *->ndenkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-* +++nk+a+ ++ g+paLv+LL++ +d ++ ++++++L+Nl+s mKIAA0384 468 DQDNKIAIKNCDGVPALVRLLrkarDMDLTEVITGTLWNLSS 509 ARM: domain 3 of 7, from 510 to 567: score 5.1, E = 1.1e+02 *->ndenkqavvdaGglpaLvqLL.....................deevq +d k+++vd+ +l aL + + ++++ +++++++ ++++ + e+v+ mKIAA0384 510 HDSIKMEIVDH-ALHALTDEViiphsgwerepnedckprhieWESVL 555 keAawaLsNlas<-* ++a++L+N++s mKIAA0384 556 TNTAGCLRNVSS 567 ARM: domain 4 of 7, from 569 to 616: score 14.7, E = 6.6 *->ndenkqavvdaG.glpaLvqLL.........deevqkeAawaLsNla ++e++ ++++ + ++aL+ ++ + +++++d +++++++++L+Nl+ mKIAA0384 569 RSEARRKLRECDgLVDALIFIVqaeigqkdsDSKLVENCVCLLRNLS 615 s<-* + mKIAA0384 616 Y 616 ARM: domain 5 of 7, from 679 to 721: score 3.1, E = 2.1e+02 *->nde.nkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-* ++ + + + + ++ + ++LL++++ + ++++ a+a+ Nl++ mKIAA0384 679 SPArGYELLFQPEVVRIYISLLkeskTPAILEASAGAIQNLCA 721 ARM: domain 6 of 7, from 727 to 767: score 30.1, E = 0.00031 *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-* + a++++++l a+ +LL++++e+v+k+A +aL+Nla mKIAA0384 727 GRYIRSALRQEKALSAIAELLtseHERVVKAASGALRNLAV 767 ARM: domain 7 of 7, from 817 to 859: score 6.3, E = 79 *->ndenkqavvdaGglpaLvqLL.....deevqkeAawaLsNlas<-* n e+++ +++ +g+++Lv ++++++e+ +++Aa +L ++ mKIAA0384 817 NLEAAKKLRETQGIEKLVLINksgnrSEKEVRAAALVLQTIWG 859 //