hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07202/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0384  ( 945 res)   mbg07202

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Arm      Armadillo/beta-catenin-like repeat             141.6    1.4e-38   5
HEAT     HEAT repeat                                     26.4    0.00068   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Arm        1/5     425   465 ..     1    41 []    37.6  2.9e-07
HEAT       1/3     430   467 ..     1    36 []     7.1       25
Arm        2/5     468   509 ..     1    41 []    42.6    9e-09
Arm        3/5     569   616 ..     1    41 []     4.8       20
Arm        4/5     680   721 ..     1    41 []    23.5   0.0048
HEAT       2/3     686   723 ..     1    36 []     5.2       46
Arm        5/5     727   767 ..     1    41 []    34.2    3e-06
HEAT       3/3     733   769 ..     1    36 []    14.1      2.6

Alignments of top-scoring domains:
Arm: domain 1 of 5, from 425 to 465: score 37.6, E = 2.9e-07
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      n++ k  v+++ ++p+Lv LL++p+ ev   A++AL N+++   
   mKIAA0384   425    NDKVKTDVRKLKGIPILVGLLDHPKKEVHLGACGALKNISF    465  

HEAT: domain 1 of 3, from 430 to 467: score 7.1, E = 25
                   *->e.lld.ellplllkllnDpdpeVReaAaeaLgalaevl<-*
                       ++++ + +p+l+ ll++p  eV + A+ aL +++      
   mKIAA0384   430    TdVRKlKGIPILVGLLDHPKKEVHLGACGALKNISFGR    467  

Arm: domain 2 of 5, from 468 to 509: score 42.6, E = 9e-09
                   *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-*
                      +++nk a+ ++ ++p+Lv+LL++ +d ++ e+ +++L+NL++   
   mKIAA0384   468    DQDNKIAIKNCDGVPALVRLLRkARDMDLTEVITGTLWNLSS    509  

Arm: domain 3 of 5, from 569 to 616: score 4.8, E = 20
                   *->npenkqavvea.GalppLvqLLs......spdeevqeeAawALsNLa
                       +e ++ ++e++G + +L+   + + +++++d++++e++++ L+NL+
   mKIAA0384   569    RSEARRKLRECdGLVDALIFIVQaeigqkDSDSKLVENCVCLLRNLS 615  

                   a<-*
                       
   mKIAA0384   616 Y    616  

Arm: domain 4 of 5, from 680 to 721: score 23.5, E = 0.0048
                   *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-*
                      +++  +++ +  ++++ ++LL++s+ + ++e++a+A+ NL+a   
   mKIAA0384   680    PARGYELLFQPEVVRIYISLLKeSKTPAILEASAGAIQNLCA    721  

HEAT: domain 2 of 3, from 686 to 723: score 5.2, E = 46
                   *->e.lldellplllklln.DpdpeVReaAaeaLgalaevl<-*
                        +++e++ + ++ll++++ p + ea+a a+++l+      
   mKIAA0384   686    LlFQPEVVRIYISLLKeSKTPAILEASAGAIQNLCAGR    723  

Arm: domain 5 of 5, from 727 to 767: score 34.2, E = 3e-06
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                          + a++++ al ++ +LL+s++e+v+++A +AL+NLa    
   mKIAA0384   727    GRYIRSALRQEKALSAIAELLTSEHERVVKAASGALRNLAV    767  

HEAT: domain 3 of 3, from 733 to 769: score 14.1, E = 2.6
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      +  +++ l ++ +ll++++++V +aA  aL +la  +   
   mKIAA0384   733    AlRQEKALSAIAELLTSEHERVVKAASGALRNLAVDA    769  

//