hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07072/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0383  ( 211 res)   mbg07072

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
Linker_histone linker histone H1 and H5 family           -5.5       0.12   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Linker_histone   1/1      63   129 ..     1    78 []    -5.5     0.12

Alignments of top-scoring domains:
Linker_histone: domain 1 of 1, from 63 to 129: score -5.5, E = 0.12
                   *->sHPpyseMIvaAIaaLKERkGSSvqAIkKYIeanhYkvdpaa..snl
                             + + AI+ L E++GSS+  I KY+ +   ++ + ++++ +
   mKIAA0383    63    -------LLKRAIEGLEEPNGSSLKNIEKYLRSQ-SDLTGTTnhPAF 101  

                   nshlklaLKkgVasGkLvq..vKGsGASGSFKLak<-*
                     +l+l  K+ V +G L +++++       ++++    
   mKIAA0383   102 QQRLRLGAKRAVNNGRLLKegPQ-------YRVNS    129  

//