hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbe/mbe05005/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0381  ( 1032 res)   mbe05005

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FH2      Formin Homology 2 Domain                       369.3   2.4e-106   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FH2        1/1     564  1002 ..     1   499 []   369.3 2.4e-106

Alignments of top-scoring domains:
FH2: domain 1 of 1, from 564 to 1002: score 369.3, E = 2.4e-106
                   *->pkkepkpkkkLKqLhWdklnslrssrqApsNPseisegtvWettvnd
                      +k  p+p+ +LK+++W kln             e ++gtvW      
   mKIAA0381   564    KKRIPQPSHPLKSFNWVKLN------------EERVSGTVW-----N 593  

                   kldeekfLynnldldeleelFaakektkkakkrsvsekksk.....lkkk
                   ++d++++  + ldl+++e+ F            s+++ ++ + +++++++
   mKIAA0381   594 EIDDSQV-FRILDLEDFEKMF------------SAYQRHQVrfgpsITSR 630  

                   kvqqnlkilDpkrsqnpplaIllrslhcklsfeetvikeailevDe.dvl
                   kv++ l+++D++r+qn  + Ill++l  kls  e  i++ail++De+++l
   mKIAA0381   631 KVKE-LSVIDGRRAQN--CIILLSKL--KLSNDE--IRQAILRMDEqEDL 673  

                   svdlleqLlkfaPYsktkeelkklreykeddekspeeLaraeqiFlllis
                    +d+leqLlkf P   +k+  ++l+e+k +    +e +ara++ Fl+++s
   mKIAA0381   674 AKDMLEQLLKFIP---EKSDIDLLEEHKHE----IERMARADR-FLYEMS 715  

                   nLipyleeRlnallfkanFeeevedLkpklekveaAceeLreSkkFrklL
                   + i ++++Rl+al fk  F e +++ kpk e++  A+ eL  S +++++L
   mKIAA0381   716 R-IDHYQQRLQALFFKKKFQERLAEAKPKVEAILLASRELTLSQRLKQML 764  

                   eliLaiGNyMNagsrrr.rGqAqGFkLssLlkLsdvKsadnk.tTLLHfl
                   e++LaiGN+MN    +++rG A+GF+ +sL+k++d+Ks+  ++ +LLH+l
   mKIAA0381   765 EVVLAIGNFMN----KGqRGGAYGFRVASLNKIADTKSSIDRnISLLHYL 810  

                   vkiirkkypdllkFysdlhhvdkaskvnleqlekdvkqlerqiknlEldk
                   + i +k++pd+l+++s+l+h+ +a+kvnl +lek+v  l+r ++++E ++
   mKIAA0381   811 IMILEKHFPDILNMPSELKHLSEAAKVNLAELEKEVSILRRGLRAVEVEL 860  

                   ggLsdpe.ghpddkflevmtpFlkaAkekyekLqkdlrdlktrfeklvey
                    +++ ++  +p dkf+ vm+ F+  ++  + +L+++l +   +f k+   
   mKIAA0381   861 -EYQRHQaRDPNDKFVPVMSDFITVSSFSFSELEDQLNEARDKFAKALTH 909  

                   ygedpkdrdvspeeFFkdfneFlkeFkkaaeenlaiEskrkeeEeeerra
                   +ge++++  ++p+eFF+ f++Fl++F++a+++    E+ r+++Ee erra
   mKIAA0381   910 FGEQESK--MQPDEFFGIFDTFLQAFLEARQDL---EAMRRRKEEDERRA 954  

                   kqlalrvketteyeqssskqkeneerrvernplmdfeverdflgvldsll
                   + ++    +++e++ ++ + +        r+  ++   ++ + g++d+l 
   mKIAA0381   955 RMEF----MLKEQREKE-RWQ--------RQRKVLAGGALEESGEFDDLV 991  

                   kelrtdssfer<-*
                   ++lr++  f     
   mKIAA0381   992 SALRSGEVFDK    1002 

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