hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj01105/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0379  ( 377 res)   mtj01105

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ANK      ankyrin repeats                                188.4    6.8e-52   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ANK        1/8       9    38 ..     1    30 []    25.4   0.0078
ANK        2/8      42    71 ..     1    30 []    23.3    0.034
ANK        3/8      79   108 ..     1    30 []    32.7    5e-05
ANK        4/8     111   142 ..     1    30 []    16.5      3.7
ANK        5/8     146   175 ..     1    30 []    33.1  3.9e-05
ANK        6/8     179   209 ..     1    30 []    25.4   0.0077
ANK        7/8     213   242 ..     1    30 []    18.2      1.2
ANK        8/8     249   278 ..     1    30 []    22.3    0.069

Alignments of top-scoring domains:
ANK: domain 1 of 8, from 9 to 38: score 25.4, E = 0.0078
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       GrT+LH  a +g++e+v +Ll++ga + +   
   mKIAA0379     9    WGRTALHRGAVTGHEECVDALLQHGAKCLL    38   

ANK: domain 2 of 8, from 42 to 71: score 23.3, E = 0.034
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       GrTp+Hl a+ g++ v+ +Ll++  +++a   
   mKIAA0379    42    RGRTPIHLSAACGHIGVLGALLQSATSVDA    71   

ANK: domain 3 of 8, from 79 to 108: score 32.7, E = 5e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+T+LH+A++ng++ +v+lLl+ ++   +   
   mKIAA0379    79    HGYTALHWACYNGHETCVELLLEQDVFQKI    108  

ANK: domain 4 of 8, from 111 to 142: score 16.5, E = 3.7
                   *->dGrTpLHlAaengnlevvklLldkga..dina<-*
                      + ++pLH+A+ n+n+  +++L+d+ + + +na   
   mKIAA0379   111    NAFSPLHCAVINDNEGAAEMLIDSLGasIVNA    142  

ANK: domain 5 of 8, from 146 to 175: score 33.1, E = 3.9e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       GrTpLH Aa ++++e+++lLl+ +a +n    
   mKIAA0379   146    KGRTPLHAAAFTDHVECLQLLLSQNAQVNS    175  

ANK: domain 6 of 8, from 179 to 209: score 25.4, E = 0.0077
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                       G+TpL++Aaeng+ ++v++L+++   d+++   
   mKIAA0379   179    TGKTPLMMAAENGQTNTVEMLVSSASaDLTL    209  

ANK: domain 7 of 8, from 213 to 242: score 18.2, E = 1.2
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                        +T+LHlA+ +g++  + l+l+k  d n+   
   mKIAA0379   213    SKNTALHLACGKGHETSALLILEKITDRNL    242  

ANK: domain 8 of 8, from 249 to 278: score 22.3, E = 0.069
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                        +TpLH+Aa+ng   vv++Ll kga++ a   
   mKIAA0379   249    ALQTPLHVAARNGLTMVVQELLGKGASVLA    278  

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