hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj01105/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0379  ( 377 res)   mtj01105

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                 209.8      4e-59   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/8       9    41 ..     1    33 []    29.6  7.2e-05
Ank        2/8      42    78 ..     1    33 []    22.1    0.013
Ank        3/8      79   109 ..     1    33 []    28.7  0.00013
Ank        4/8     111   144 ..     1    33 []    23.2    0.006
Ank        5/8     146   178 ..     1    33 []    38.7  1.3e-07
Ank        6/8     179   212 ..     1    33 []    37.1    4e-07
Ank        7/8     213   245 ..     1    33 []    15.8        1
Ank        8/8     249   281 ..     1    33 []    33.9  3.6e-06

Alignments of top-scoring domains:
Ank: domain 1 of 8, from 9 to 41: score 29.6, E = 7.2e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LH  a  g++e+v  Ll++GA   ++d    
   mKIAA0379     9    WGRTALHRGAVTGHEECVDALLQHGAKCLLRDS    41   

Ank: domain 2 of 8, from 42 to 78: score 22.1, E = 0.013
                   *->dGfTPLHlAalrgnlevvklLls....qGAdlnaqdd<-*
                       G+TP+Hl a +g++ v+  Ll++ ++  A++ ++d+   
   mKIAA0379    42    RGRTPIHLSAACGHIGVLGALLQsatsVDANPAVVDN    78   

Ank: domain 3 of 8, from 79 to 109: score 28.7, E = 0.00013
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+T+LH+A+++g++ +v+lLl+   d+  + d   
   mKIAA0379    79    HGYTALHWACYNGHETCVELLLE--QDVFQKID    109  

Ank: domain 4 of 8, from 111 to 144: score 23.2, E = 0.006
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                      + f+PLH+A++++n+  +++L+++ GA++   +d   
   mKIAA0379   111    NAFSPLHCAVINDNEGAAEMLIDsLGASIVNATD    144  

Ank: domain 5 of 8, from 146 to 178: score 38.7, E = 1.3e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+TPLH Aa+ +++e+++lLlsq A +n  d    
   mKIAA0379   146    KGRTPLHAAAFTDHVECLQLLLSQNAQVNSADS    178  

Ank: domain 6 of 8, from 179 to 212: score 37.1, E = 4e-07
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                       G TPL++Aa++g+++ v++L+s++ Adl +qd+   
   mKIAA0379   179    TGKTPLMMAAENGQTNTVEMLVSsASADLTLQDK    212  

Ank: domain 7 of 8, from 213 to 245: score 15.8, E = 1
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                        +T+LHlA+ +g++  + l l++  d n+ +    
   mKIAA0379   213    SKNTALHLACGKGHETSALLILEKITDRNLINA    245  

Ank: domain 8 of 8, from 249 to 281: score 33.9, E = 3.6e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                        +TPLH+Aa++g + vv++Ll++GA++ a+d    
   mKIAA0379   249    ALQTPLHVAARNGLTMVVQELLGKGASVLAVDE    281  

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