hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg05380/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0377 ( 1442 res) mbg05380 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Acid_phosphat_A Histidine acid phosphatase 331.9 7.4e-96 1 PGAM Phosphoglycerate mutase family -14.6 0.41 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PGAM 1/1 497 666 .. 1 216 [] -14.6 0.41 Acid_phosphat_A 1/1 396 912 .. 1 395 [] 331.9 7.4e-96 Alignments of top-scoring domains: PGAM: domain 1 of 1, from 497 to 666: score -14.6, E = 0.41 *->rlyLvRHGetewlNaen.lqeegrisqlqGwt........LtekGre +l HG + N ++lq e + + + +++Lt+ Gr mKIAA0377 497 QLTYYPHGVKAS-NEGQdLQREPL---APSLLlvlkwggeLTPDGRV 539 QAralgkrllqLk..................vqavesrtaslklseelgi QA++lg++ ++ ++++++ + ++ + l+ mKIAA0377 540 QAEELGRA---FRcmypggqgdyagfpgcglL--------------RLHS 572 pfda...iysSPlkRArqTAeiilaelLkaelgnpedrwdeglktklpvi f ++ +iy+S+ R + TA++ +a+ +l mKIAA0377 573 TFRHdlkIYASDEGRVQMTAAA-FAK----GLL----------------- 600 vdprLrErdfGfedWsrceeGltfaelkekyp......eyr.wredpadf ++ e G ++ l ++ + + ++ +++ + mKIAA0377 601 -------------AL---E-GELTPILVQMVKsanmngLLDsDSD----- 628 rppgaakredeiegvPgGEeasladvaaRv.aaleeli........hpge sl + Rv+a l ++++++ + ++++++ mKIAA0377 629 ---------------------SLSSCQHRVkARLHHILqqdapfgpEDYD 657 nviliVsHGgviral<-* + +++ ++ mKIAA0377 658 QL------APTGSTS 666 Acid_phosphat_A: domain 1 of 1, from 396 to 912: score 331.9, E = 7.4e-96 *->eLefVqvvfRHGdRtPtksypkdikaeidkllsa............. eL++V++++RHGdRtP++++++++++++++ l++++++ ++++ + + mKIAA0377 396 ELRCVIAIIRHGDRTPKQKMKMEVTHPRFFALFEkhggyktgklklk 442 .....................................alalegklsflgd ++++ ++ + ++ + +++++ + ++++++ ++ + +le++++f+g+ mKIAA0377 443 rpeqlqevlditrlllaelekepeaeieektgkleqlKSVLEMYGHFSGI 492 y.ylvpdp......................lqwplgwGqeLTpeGreqaf ++++++++ +++ + ++++++ ++++ ++l l+wG+eLTp Gr+qa+ mKIAA0377 493 NrKVQLTYyphgvkasnegqdlqreplapsLLLVLKWGGELTPDGRVQAE 542 elGrylRqrYvedl.........gLlpdeynarkevyirstdvdRtlaSA elGr +R++Y++++++ + ++ gLl+ +++ r++++i+++d++R++++A mKIAA0377 543 ELGRAFRCMYPGGQgdyagfpgcGLLRLHSTFRHDLKIYASDEGRVQMTA 592 qaflaGlfppdg...................lvdvwndlldwqpipvhti +af++Gl+ + +++ ++ + ++ + ++ l+++ ++l++ q + + mKIAA0377 593 AAFAKGLL-ALEgeltpilvqmvksanmnglLDSDSDSLSSCQHRVKARL 641 peakkaldnllll.y.....nsCpafeelqepllvekrvdeelakllady + + ++++++ + +y++ + + + +++ ++++ +v++++ +l++ + mKIAA0377 642 HHILQQDAPFGPEdYdqlapTGSTSLLNSMSVIQNPVKVCDQVFALIENL 691 lepiakrlsql...qllcltGgtnltaddvwalldlclfetn.krdgspf ++i++r++++++ +l+ + ++t +++++w++l + ++++ + +d+s++ mKIAA0377 692 THQIRERMQDPssvDLQLYHSETLELMLQRWSKLERDFRQKSgRYDISKI 741 pdlftelkqyellhleylllsdLseyyglsk.LaDfvipQEYgignelar pd+++++k y+++h+ l l+ e+ +lsk LaD+vipQEYgi++e++ mKIAA0377 742 PDIYDCVK-YDVQHNGSLGLQGTAELLRLSKaLADVVIPQEYGISREEKV 790 lqGgpllnellkrltnklvgdk.....T.tnrtl.snpatfpldrklyly ++++++ +ll++++ +l++++++++ +++++ +++++++++++ +++ly mKIAA0377 791 EIAVGFCLPLLRKILLDLQRTHedesvNkLHPLYsRGVLSPGRHVRTRLY 840 faHDttiapllaaLre.Glfddl.gldkp.fqdsfksseepPyaarlvfE f++++++++ll+++r++Gl d++++ +++++ ++++ e++y++++v++ mKIAA0377 841 FTSESHVHSLLSVFRYgGLLDETqDAQWQrALAYLSAISELNYMTQIVIM 890 lyqcddgk.a.tgeyyVrvlyn<-* ly+++ ++ ++++++V+++++ mKIAA0377 891 LYEDNTRDpLsEERFHVELHFS 912 //