hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00975/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0376  ( 1135 res)   mbg00975

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CH       Calponin homology domain                        66.3    3.9e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CH         1/1    1031  1129 ..     1   100 []    66.3  3.9e-15

Alignments of top-scoring domains:
CH: domain 1 of 1, from 1031 to 1129: score 66.3, E = 3.9e-15
                   *->eeeallrWinsll......kvtnfssdlkDGvvLckLlnslsPagsv
                       ++all+W+++++++ ++ ++tnfss+++DG+++c+Ll+ + P   +
   mKIAA0376  1031    KRNALLKWCQKKTegyqniDITNFSSSWNDGLAFCALLHTYLP-AHI 1076 

                   dkkk..rfkkleNinlalsfaeklgafLGvgkvvlfdpeDlvegnenkkl
                   ++   + ++k  N  la+++ae+       g+   +d +++      +++
   mKIAA0376  1077 PYQElnSQDKKRNFTLAFQAAESV------GIKSTLDINEMARTE--RPD 1118 

                   ilgviwtLirl<-*
                     +v+ ++ ++   
   mKIAA0376  1119 WQNVMLYVTAI    1129 

//