hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg00975/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0376 ( 1135 res) mbg00975 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CH Calponin homology (CH) domain 106.5 5.3e-28 1 K-box K-box region -28.7 0.75 1 Filament Intermediate filament protein -184.1 0.36 1 MAP65_ASE1 Microtubule associated protein (MAP65/ASE1 -260.8 0.97 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- K-box 1/1 730 812 .. 1 103 [] -28.7 0.75 Filament 1/1 603 847 .. 1 359 [] -184.1 0.36 MAP65_ASE1 1/1 437 993 .. 1 726 [] -260.8 0.97 CH 1/1 1031 1134 .. 1 121 [] 106.5 5.3e-28 Alignments of top-scoring domains: K-box: domain 1 of 1, from 730 to 812: score -28.7, E = 0.75 *->yqkssgnss.lwesntqnwqqEaaKLkaqienLQnnrnqRhllGEdL ++ ++++ +l ++++ + +E+ L + L+ ++ mKIAA0376 730 SD-LENTVKkLQDQKH-DMEREIKTLHRR---LR--EE--------- 760 gsLslKELqqLEqqLEkgLkhIRsrKnqllldqieelqkKErelqeeNka E +q + L +++ + K + ++i +l+++ +e qe N+ mKIAA0376 761 ----SAEWRQFQADLQTAVVIANDIKSEA-QEEIGDLKRRLHEAQEKNEK 805 Lrkkiee<-* L k++ee mKIAA0376 806 LTKELEE 812 Filament: domain 1 of 1, from 603 to 847: score -184.1, E = 0.36 *->nEKeqmQnLNDRLAsYIdKVRfLEqqNkeLevkieelrqkqsrggpa nEK+ +L +N+ + i++l + mKIAA0376 603 NEKQKVAELYS-------------IHNSGDKSDIQDLLESV------ 630 svsrlyslYeteieeLRrqidqltnerarlqlEidnlrealedfrkKyed ++ ++++ et L++ + + n+ +rlq i ++ ++++ f+++ ++ mKIAA0376 631 RL--DKEKAETLASSLQEDLAHTRNDANRLQDTIAKVEDEYRAFQEEAKK 678 KeDLaaQnqlkdlEialntkeaeLaTaLeRqeaEndlvgLRaQiAklEsl q+ dl + l ++L mKIAA0376 679 --------QIEDLNMTL--------------------EKL---------- 690 aaRkdlDeaTLarvDLEnkvEsLqEElaFLK..knHeEEvkeLqaqiqdt R +l+e r+D + L++E++ + k+H+ + + + mKIAA0376 691 --RSELEEKDTERSDMKETIFELEDEVEQHRavKLHDNLIISDLENTVKK 738 gqvnVEmDaarqqEwklDLtkaLrEiRaQYEeiAeknrqeaEewYksKle ++ + + rEi+ + ++ r+e+ ew + + + mKIAA0376 739 --LQDQKHDME------------REIKT----LHRRLREESAEWRQFQ-A 769 eLqtaaarngealrsaKeEitElRRqiQsLeiELqslksqnasLErqlaE +Lqta++ ++ ++a+eEi +l+R+ L + + +n++L ++l+E mKIAA0376 770 DLQTAVVIANDIKSEAQEEIGDLKRR-------LHEAQEKNEKLTKELEE 812 lEeryeaelaq.yqalisqlEeeLqqlreEMarqLrEYQeLLdVKlaLDi ++ r ++e +++ + ++ +E++L+ lr+ M mKIAA0376 813 IKSRKQEEERGrVYNYMNAVERDLAALRQGM------------------- 843 EIATYRKLLEGEEsR<-* sR mKIAA0376 844 -----------GLSR 847 MAP65_ASE1: domain 1 of 1, from 437 to 993: score -260.8, E = 0.97 *->ekdasladikkhissfekdlveeeif........sskkqailkdIav +++a l i + +s +l ee + ++ ++s+k + + +I+ mKIAA0376 437 QELADLQQITQELNSENERLGEEKVIlmeslcqqSDKLEHFGRQIEY 483 lraElerLsselGieedisnrlLhRiNDPSGiKTiPDLYiRNAiLlteak r+ l + + i+ed + + mKIAA0376 484 FRSLLDEHHISYVIDEDVKSGR---------------------------- 505 tvqlsekkqlskkskvdigqrpdsipllvwllkLrdqlesLkilkhLIQs ++ ++ ++ r + + ll L l+ mKIAA0376 506 -----YMELEQRYMDLAENARFEREQLLGVQQHLSNTLKMA--------- 541 lkrllmvltearkqkaeRra.eikeLlhqllqL..cneLGepplsldFii e ++ a+++++ +ke h + + +++++G l mKIAA0376 542 ---------EQDNKEAQEMIgALKERSHHMERIieSEQKGKAALAA---- 578 DlkkdaeplpLsdvidleeleelRerlgelreekvkRLeevdsl..kqeI e+ + +d e++ l +l e +++kv+ L ++ ++k I mKIAA0376 579 -T---LEEYKATVASDQIEMNRLKAQL-ENEKQKVAELYSIHNSgdKSDI 623 kslceeLgvepktlIrtdfEsdvlsYeelleStserpNdhcvtrEtidkL l e ++ + E + s e l t +++N + ti+k mKIAA0376 624 QDLLESVRLDK-----EKAETLASSLQEDLAHTRNDANRL---QDTIAKV 665 dkmlenLaaqkkeredkiddLreqiseLWnRLqisdEeqkiFHNVTCSiA + ++++ k+ i+dL +++L L + d e++ mKIAA0376 666 EDEYRAFQEEAKK---QIEDLNMTLEKLRSELEEKDTERS---------- 702 LTErrvreasslsqesikrleeEveRLealK.kqnlKkfIedlRieIeEl ++ e+i le+Eve a K nl+ I+dl + l mKIAA0376 703 -------DM----KETIFELEDEVEQHRAVKlHDNLI--ISDLENTVKKL 739 WDllfySeEqRksENFspyyeelytSATTLkedEqLLelhEnEikrLKee D+ + e + k l+ E+ +E + + mKIAA0376 740 QDQKHDMEREIKT-----LHRRLRE--------ES------AEWRQFQAD 770 yssnKeILelvekwesLwermeeLEakasDpNRfnAnRGRRDPGhKiLTL + I + + +++e+ L + R+ ++ mKIAA0376 771 LQTAVVIANDIKS--EAQEEIGDLKR------RLH---E----AQ----- 800 KEEKeRKrltrkLPkvaeqLtekvtaweeergtpFLfhGeplLerldiqq ++ +lt++L+ + + eeerg ++ + mKIAA0376 801 ---EKNEKLTKELEEIKSR------KQEEERG--------RVYNYMN--- 830 qqieadwerkrqrkqrskkrkktatktssvmrtpskrkgSlvps..Tpgt a+++ + +++r+ + ++tss++ ++ k+ l++s + + mKIAA0376 831 ----AVERDL--AALRQGMGLSRRSSTSSEPTPTVKT---LIKSfdSASQ 871 lrnsrnitmstkslkktprltksstsekaslaskstgnlkkratsrrast n ++++ ++++l +p +++++ + +++ s +st mKIAA0376 872 VPNAAAAAIPRTPLSPSP---------MKTPPAAAVSPMQRHSISGPIST 912 lppltgasrsekeNlirskanpsaskaasSplqrnlkspenkvkkvrvld plt+ + +s+ + p+q l+ + + +++ mKIAA0376 913 SKPLTAL-------------SDKRSNYGELPVQEHLLRT-----SSTSRP 944 ihlrrkstkgr...istgst.neekkrelkkvpksppksevvnspakps< +l r+ +++ ++is+ +++ee kr ++ + +++p+s + + p mKIAA0376 945 ASLPRVPAMESaktISVSRRsSEEMKRDISASEGASPASLMAMGTTSPQ 993 -* mKIAA0376 - - CH: domain 1 of 1, from 1031 to 1134: score 106.5, E = 5.3e-28 *->qekellrWinsvlagypgnkdtlPippvritnfftdwlkDGlaLcaL +++ll+W++++++gy++ ++itnf+++w+ DGla+caL mKIAA0376 1031 KRNALLKWCQKKTEGYQN---------IDITNFSSSWN-DGLAFCAL 1067 lnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeDi l+ + P i++ +l+ +dk N +la++aae+ +gi +d +++ mKIAA0376 1068 LHTYLPAHIPYQ---ELNSQDKKRNFTLAFQAAES--VGI-KSTLDINEM 1111 vegnpdPDeklvltllwqLirrfq<-* + + PD++ v+ ++ +++++f+ mKIAA0376 1112 ARTER-PDWQNVMLYVTAIYKYFE 1134 //