hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg00223/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0375 ( 1538 res) mbg00223 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RUN RUN domain 171.5 1.4e-47 1 SH3_2 Variant SH3 domain 35.3 1.4e-06 1 SH3_1 SH3 domain 23.4 0.00063 1 Extensin_2 Extensin-like region -144.5 0.79 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Extensin_2 1/1 408 765 .. 1 385 [] -144.5 0.79 RUN 1/1 1058 1194 .. 1 174 [] 171.5 1.4e-47 SH3_2 1/1 1473 1525 .. 1 69 [] 35.3 1.4e-06 SH3_1 1/1 1472 1526 .. 1 58 [] 23.4 0.00063 Alignments of top-scoring domains: Extensin_2: domain 1 of 1, from 408 to 765: score -144.5, E = 0.79 *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy + lvva + + s sSP P S s ++ mKIAA0375 408 QARLVVATQNYYKLVTCD-LSSQSSPSPAG-----SSITSCSEEHTK 448 kSPPPpkkpYvYsSPPPPsyvykSPPPPkp...yvYkSPPpPkyvYkSPP SPPP P P P P +p++ y+++ P + + mKIAA0375 449 ISPPPG---------PCP-----DPDPNQPseyYLFQKPDIQPEEQEAVG 484 pPvykYkSPPPPthsppPpyvykSPPPPpk.kyvykSpPpptPvYkYkSP +P P + y SPP + +S + +SP mKIAA0375 485 SPAEAATAMGPTV-LEGQVYTNTSPPNLNTgRQRSRSYDRS----LERSP 529 PPPp...yvYkspPpPvkkripyvYkSPPPPp...PYvYkSpPppvkkyi P ++ s P v S P +P SpP+ v + mKIAA0375 530 PVRLgslERMLSCP---------VRLSEGPAAlagP---ASPPRRVTSFA 567 yksppppephkYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkksYk.s + S PP sv + ++++ SP + + mKIAA0375 568 ELAKGRKKAA----GSGSPPL---RASVGDSSQEF---SPIQEAQQDRaA 607 psp..pkyVYkSpPpPvipykYkSPPPPkkkyspaPrkpyvYkSPPP.Pt p ++ + + p P p P P ++P+ +S P P+ mKIAA0375 608 PLDegTRCSHSLPSLPLGPSLDLLGPEP----WSTPVCQGSQSSEMPlPS 653 yvYkSpPpPykpptppkiyksPPPPtPvyvYkspPpippik..sssppPv p + p++ ++ P + s + ++ + Pv mKIAA0375 654 LRAAGQGPLAQLMDPGPAFSGSPATS-HTQRDSRAR---ADggGTESRPV 699 yvYkSpPppvysPPPPyvYssPPPPvy............vynsaPvykks Y +p P P+v++ P + + ++ ++ + s + mKIAA0375 700 LRYSKEQRPTTLPIQPFVFQHHFPKQLakaralhslsqlYSLSGCSRAQQ 749 PPkhhYiYsSPPPphh<-* P + + + + P p mKIAA0375 750 PAPLVISTAQGPAPAP 765 RUN: domain 1 of 1, from 1058 to 1194: score 171.5, E = 1.4e-47 *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls +LCpa+ A+l++GLk af++d+++g+++++++sv++ mKIAA0375 1058 YLCPAVQAVLEDGLK------------AFVLDVIIGQRKNMPWSVVE 1092 sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi s+ q ++ +++v + l+++vsq+++L+ mKIAA0375 1093 AST-----QLGP------------STKVLHGLYNKVSQFPELTS------ 1119 ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlL.... +++r++ A+i+++Ln +sL++++++L+++e++++++Y+p+++L+ + mKIAA0375 1120 --HTMRFN--AFILGLLNIRSLEFWFNHLYNHEDIIQTHYQPWGFLraah 1165 .rdpSdeegCeillslLqgLsaldFsLdlkfe<-* +++p + e+ll+lLq+L +l+FsLdl+f+ mKIAA0375 1166 tVCP--GLF-EELLLLLQPLALLPFSLDLLFQ 1194 SH3_2: domain 1 of 1, from 1473 to 1525: score 35.3, E = 1.4e-06 *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl ++a++++ a t+++ Ls++kGd+++v+ + +++w + mKIAA0375 1473 EVQALCHHLA-TGPGQ------LSFHKGDILRVL----GPARGDWLR 1508 geslggGrrrRGlvPssaveel<-* +++ g + GlvP +v l mKIAA0375 1509 CSR--GPDT--GLVPLAYV-TL 1525 SH3_1: domain 1 of 1, from 1472 to 1526: score 23.4, E = 0.00063 *->kkvvALYDYearesdELsFkkGDvitvleksdd.gWWkgrlkgtgGk v+AL a++++ LsF kGD++ vl ++W+++ + + mKIAA0375 1472 CEVQALCHHLATGPGQLSFHKGDILRVLG-PARgDWLRCSRGPD--- 1514 eGliPsNYVepv<-* +Gl+P YV++ mKIAA0375 1515 TGLVPLAYVTLP 1526 //