hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfk/mfk00395/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0372  ( 808 res)   mfk00395

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR      Tetratricopeptide repeats                       54.3    1.6e-11   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR        1/5     106   139 ..     1    34 []    29.2  0.00057
TPR        2/5     225   258 ..     1    34 []    11.2       27
TPR        3/5     296   329 ..     1    34 []     0.9    4e+02
TPR        4/5     333   366 ..     1    34 []     3.2  2.2e+02
TPR        5/5     644   677 ..     1    34 []    14.9       10

Alignments of top-scoring domains:
TPR: domain 1 of 5, from 106 to 139: score 29.2, E = 0.00057
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a a+ nlG++yl+ +++++A e+++ A +ldP++   
   mKIAA0372   106    AAAWTNLGVLYLATENIEQAHEAFKMAQSLDPSY    139  

TPR: domain 2 of 5, from 225 to 258: score 11.2, E = 27
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a a+  lG + ++l   +eA e+y++A +l  +    
   mKIAA0372   225    ASAFTMLGYLNEHLQLKKEAAEAYQRATTLLHSA    258  

TPR: domain 3 of 5, from 296 to 329: score 0.9, E = 4e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       e     ++a++ +g y+e   +ye+AL++  +    
   mKIAA0372   296    LEDIIGFALALFMKGLYKESGSAYERALAVCKSE    329  

TPR: domain 4 of 5, from 333 to 366: score 3.2, E = 2.2e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a +l  ++ + +k+g+ d A  ++ k+  l +     
   mKIAA0372   333    AHILTAMAIVEYKQGKMDAAKSFLFKCSILKEPT    366  

TPR: domain 5 of 5, from 644 to 677: score 14.9, E = 10
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      + a+  l+++y ++g    A+ +y+k+L+++ +    
   mKIAA0372   644    VPAWQWLAQVYQSQGMMGAAEMCYRKSLQVASQQ    677  

//