hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfk/mfk00395/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0372  ( 808 res)   mfk00395

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR_1    Tetratricopeptide repeat                        70.5    3.4e-17   4
TPR_2    Tetratricopeptide repeat                        55.1    1.5e-12   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR_1      1/4      72   105 ..     1    34 []     0.9       28
TPR_2      1/5      72   105 ..     1    34 []     2.0  1.3e+02
TPR_1      2/4     106   139 ..     1    34 []    38.6  1.4e-07
TPR_2      2/5     106   139 ..     1    34 []    29.6  7.2e-05
TPR_1      3/4     225   258 ..     1    34 []    13.9     0.79
TPR_2      3/5     225   258 ..     1    34 []    13.4      5.6
TPR_2      4/5     296   329 ..     1    34 []     6.5       38
TPR_1      4/4     644   677 ..     1    34 []    20.9    0.031
TPR_2      5/5     644   677 ..     1    34 []    12.9      6.8

Alignments of top-scoring domains:
TPR_1: domain 1 of 4, from 72 to 105: score 0.9, E = 28
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       +     +++y+  g+y  A  ++ k ++ +  n   
   mKIAA0372    72    HWNALGVAACYRGVGNYALAQHCFIKSIQAEQIN    105  

TPR_2: domain 1 of 5, from 72 to 105: score 2.0, E = 1.3e+02
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                             + +y+  g+y+ A +++ k+++ +  n   
   mKIAA0372    72    HWNALGVAACYRGVGNYALAQHCFIKSIQAEQIN    105  

TPR_1: domain 2 of 4, from 106 to 139: score 38.6, E = 1.4e-07
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      a a++nlG++yl+ ++ ++A ea++ A +ldP++   
   mKIAA0372   106    AAAWTNLGVLYLATENIEQAHEAFKMAQSLDPSY    139  

TPR_2: domain 2 of 5, from 106 to 139: score 29.6, E = 7.2e-05
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      a+a+ nlG++y++ ++ e+A ea++ A +ldP++   
   mKIAA0372   106    AAAWTNLGVLYLATENIEQAHEAFKMAQSLDPSY    139  

TPR_1: domain 3 of 4, from 225 to 258: score 13.9, E = 0.79
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      a a++ lG++ ++l+  +eA eay++A  l  +    
   mKIAA0372   225    ASAFTMLGYLNEHLQLKKEAAEAYQRATTLLHSA    258  

TPR_2: domain 3 of 5, from 225 to 258: score 13.4, E = 5.6
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      a a  +lG + ++l+  +eA+eay++A  l  ++   
   mKIAA0372   225    ASAFTMLGYLNEHLQLKKEAAEAYQRATTLLHSA    258  

TPR_2: domain 4 of 5, from 296 to 329: score 6.5, E = 38
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                       e     +la++ +g y+e   aye+Al+  ++    
   mKIAA0372   296    LEDIIGFALALFMKGLYKESGSAYERALAVCKSE    329  

TPR_1: domain 4 of 4, from 644 to 677: score 20.9, E = 0.031
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      + a+  l+++y ++g   +A+ +y+k L++  +    
   mKIAA0372   644    VPAWQWLAQVYQSQGMMGAAEMCYRKSLQVASQQ    677  

TPR_2: domain 5 of 5, from 644 to 677: score 12.9, E = 6.8
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      + a+ +l+++y  +g    A+ +y+k+l+ + +    
   mKIAA0372   644    VPAWQWLAQVYQSQGMMGAAEMCYRKSLQVASQQ    677  

//