hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg01404/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0369 ( 791 res) mbg01404 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Pkinase Protein kinase domain 343.0 3.2e-99 1 DCX Doublecortin 191.4 1.4e-53 2 Pkinase_Tyr Protein tyrosine kinase 39.0 2.7e-14 1 Hepatitis_core Hepatitis core antigen -56.2 0.37 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DCX 1/2 126 190 .. 1 69 [] 94.2 2.6e-24 DCX 2/2 255 316 .. 1 69 [] 97.3 3.1e-25 Hepatitis_core 1/1 162 389 .. 1 265 [] -56.2 0.37 Pkinase_Tyr 1/1 442 696 .. 1 272 [] 39.0 2.7e-14 Pkinase 1/1 442 698 .. 1 287 [] 343.0 3.2e-99 Alignments of top-scoring domains: DCX: domain 1 of 2, from 126 to 190: score 94.2, E = 2.6e-24 *->lvvnrkrdvksfdaLLedLtkvvTekiklptGaaAvrklYTtDGshr ++++++r ++sf+aLL dLt+ ++++++lp+G vr +YT+DG ++ mKIAA0369 126 YAISPDR-FRSFEALLADLTRTLSDNVNLPQG---VRTIYTIDGLKK 168 islldeledggvYVAsgseaFk<-* is+ld+l +g+ YV+++ e+Fk mKIAA0369 169 ISSLDQLVEGESYVCGSIEPFK 190 DCX: domain 2 of 2, from 255 to 316: score 97.3, E = 3.1e-25 *->lvvnrkrdvksfdaLLedLtkvvTekiklptGaaAvrklYTtDGshr +++n+k+ ++sf+++L+d +T+ ikl+ G+ v++lYT+DG+++ mKIAA0369 255 ILLNKKT-AHSFEQVLTD----ITDAIKLDSGV--VKRLYTLDGKQV 294 islldeledggvYVAsgseaFk<-* +l+d++ d+++++A+g+e+F+ mKIAA0369 295 MCLQDFFGDDDIFIACGPEKFR 316 Hepatitis_core: domain 1 of 1, from 162 to 389: score -56.2, E = 0.37 *->DIdpykefgasveLLsFLPsDFFPsirDLlrDtadALePYrealesk Id k + + +L + + + eP+++ + k mKIAA0369 162 TIDGLKKISSLDQL---------VEGESYV---CGSIEPFKKLEYTK 196 eHvlispHhtaLiedfrQailcweelaelatwVgenledpvsrdlvvsye + + + ++ + + +lat+ g + e +d++ mKIAA0369 197 NVN--PNWSVNV-----KTTSASRAVSSLATAKGGPSEVRENKDFIRPK- 238 eaeeiPlgdlfknqeerivnfqPdyPitarihahlkayakvNenlglkiR i + + ri + ++ + + k++ + ++ mKIAA0369 239 -LVTIIRSGVKPRKAVRILLNKKTAHSFEQVLTDITDAIKLDSGVVKRLY 287 qlLWfHisCL..lfGretVleYlvsfgvWirTPeaYRpknAPilstlpet l + CL++ fG + + ++ Pe++R ++ l+ +e mKIAA0369 288 TLDGKQVMCLqdFFGDDDI--FIAC------GPEKFRYQDDFLLDE-SEC 328 ivVrrggRgktkgtRspRrrt...PspRkvkttvvyGRRRSqSprRRapt vV+ ++ tk + ++Rr t+++P p RRS+Sp ++ mKIAA0369 329 RVVKS--TSYTKIASASRRGTtksPGPS----------RRSKSPASTSSV 366 pqraGsPlPrsssdrsqSpssqc<-* Gs l +s +s Sps+ mKIAA0369 367 NGTPGSQLSTPRSGKSPSPSPTS 389 Pkinase_Tyr: domain 1 of 1, from 442 to 696: score 39.0, E = 2.7e-14 *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtL.keigasseei k g+++G G+F +V +++ + +t + A K+++k ++ +e mKIAA0369 442 YKVGRTIGDGNFAVVKECIER----STAREYALKIIkKS-KCRGKE- 482 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd ++E+si+++ +HpNiV L+ + e ly+V+E+++gGd mKIAA0369 483 --HMIQNEVSILRRV-KHPNIVLLIEEMDVPTE-----LYLVMELVKGGD 524 LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV L d + ++ t d ++ + A++ YL+s n+vHRD+ N LV mKIAA0369 525 LFDAITS---TSKYTERDASGMLYNLASAIKYLHSLNIVHRDIKPENLLV 571 se....nlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygk e++++++ K +DFGLa + + Y ++ g APE +++ mKIAA0369 572 YEhqdgSKSLKLGDFGLATIV-DGPLY-TVCG----TPTYVAPEIIAETG 615 FtskSDVWSFGVlLWEiftlGeqPFYpgmsnee.vlellyed..GyRLpr + k D+W+ GV + ++ G +P + g +++e +++++ + + + p mKIAA0369 616 YGLKVDIWAAGVITYILLC-GFPP-FRGGDDQEvLFDQILMGqvDFPSPY 663 PenCPdelYdlMlqCWaedPedRPtFselverL<-* +n +d +l+ + + ++R + +++e+ mKIAA0369 664 WDNVSDSAKELINMMLLVNVDQRFSAVQVLEHP 696 Pkinase: domain 1 of 1, from 442 to 698: score 343.0, E = 3.2e-99 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr y++++++G G+f++V+++++++t +++A+Kiikk+k + k++++ mKIAA0369 442 YKVGRTIGDGNFAVVKECIERSTAREYALKIIKKSKCRGKEHMIQN- 487 rsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrlldLfdylse E++il+r++HpNIv li+ + +++lylV+E++ gG dLfd+++ mKIAA0369 488 --EVSILRRVKHPNIVLLIEEMDVPTELYLVMELVKGG----DLFDAIT- 530 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldengv + ++ +e++a +++ ++++++YLHs +i+HRD+KPeN+L+ + + mKIAA0369 531 --STSKY--TERDASGMLYNLASAIKYLHSLNIVHRDIKPENLLVY-EHQ 575 vda.flKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkv ++++lK++DFGlA t +++l+t++GTp Y+APE++ +gyg kv mKIAA0369 576 DGSkSLKLGDFGLA----TiVDGpLYTVCGTPTYVAPEIIA-ETGYGLKV 620 DvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewds D+W++Gvi y+ll+G pPF+g +dq +l+++il+++++f+sp+wd+ mKIAA0369 621 DIWAAGVITYILLCGFPPFRGG----DDQEVLFDQILMGQVDFPSPYWDN 666 isrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* +s ++ak+Li+ +L ++ +R +a ++l+HPw+ mKIAA0369 667 VS-----------DSAKELINMMLLVNVDQRFSAVQVLEHPWV 698 //