hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph01359/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0364  ( 1026 res)   mph01359

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IG       Immunoglobulin                                 113.5    2.3e-29   7
IGc2     Immunoglobulin C-2 Type                         58.3    9.6e-13   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IG         1/7      34   114 ..     1    58 []     7.0       33
IG         2/7     128   213 ..     1    58 []    10.9       12
IG         3/7     224   308 ..     1    58 []    14.3      4.7
IGc2       1/5     325   390 ..     1    56 []    32.8  4.8e-05
IG         4/7     319   406 ..     1    58 []    28.4    0.001
IGc2       2/5     414   473 ..     1    56 []     3.4      2.5
IG         5/7     408   489 ..     1    58 []    12.6      7.5
IGc2       3/5     676   739 ..     1    56 []     9.2     0.61
IG         6/7     670   755 ..     1    58 []    11.5      9.8
IGc2       4/5     772   840 ..     1    56 []     5.1      1.6
IG         7/7     766   851 ..     1    58 []    28.9  0.00072
IGc2       5/5     864   923 ..     1    56 []     8.0     0.82

Alignments of top-scoring domains:
IG: domain 1 of 7, from 34 to 114: score 7.0, E = 33
                   *->pp.vtvkeGesvtLtC.as..............titWy.........
                       +++   + e++tL C+ ++  +++    ++++++tW +++ ++ + 
   mKIAA0364    34    ESnYPQAPWENITLWCkSPsrvsskflllkdnsQMTWIrppyktfqv 80   

                   .LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-*
                   ++ I+ +t++++   G Y+C  ++ +++s ++ ++  l   
   mKIAA0364    81 sFFIgALTESNT---GLYRCCYWKEKGWS-KPSKILEL    114  

IG: domain 2 of 7, from 128 to 213: score 10.9, E = 12
                   *->pp.vtvkeGesvtLtC.as....titWy...................
                      + ++   +G +v++ C+ +  +  + +++ + + + + + ++++   
   mKIAA0364   128    QAeTPPLPGCNVNIFChGWlqdlVFMLFkegytepvdyqvptgtmai 174  

                   LtI.nvtpeDsesgGtYtCaat......sgsasseqgttLtVl<-*
                   + I+n+ pe++   G+Y C+ +    ++  s  s ++ +L V    
   mKIAA0364   175 FSIdNLAPENE---GVYICRTHiqmlptLWSEPS-NPLKLVVA    213  

IG: domain 3 of 7, from 224 to 308: score 14.3, E = 4.7
                   *->pp.vtvkeGesvtLtC.as....titWy...................
                       p+    +Ges++L+C+ +  + t+ +++  + +++  ++++ ++  
   mKIAA0364   224    HPgPILAPGESLSLRCqGPiygmTFALMrledlkksfyhkkpiknea 270  

                   .LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-*
                    + +++++ +D+   G Y C   +++  gs  s +  ++ V+   
   mKIAA0364   271 yFYFqDLKIQDT---GHYLCFYYdgsyRGSLLS-DILKIWVT    308  

IGc2: domain 1 of 5, from 325 to 390: score 32.8, E = 4.8e-05
                   *->leGqsVtLtCpasgdpvpnItWlk...gkplp........sgstLti
                      ++Gq+V+L+C+    ++     +k++++kpl+  + ++++++++  +
   mKIAA0364   325    QMGQNVSLRCG-GLMDGVGLALYKkgeEKPLQfldassntGNNSFFL 370  

                   knvsleDsGlYtCvArNsvg<-*
                   knv++ D+G+Y+C     +    
   mKIAA0364   371 KNVTYRDAGIYSCHYYLTWK    390  

IG: domain 4 of 7, from 319 to 406: score 28.4, E = 0.001
                   *->pp.vtvkeGesvtLtC.as....titWy...................
                      +p+ + + G++v+L+C+   ++  + +y+++  ++ +  + ++++++
   mKIAA0364   319    QPsPVIQMGQNVSLRCgGLmdgvGLALYkkgeekplqfldassntgn 365  

                   ..LtI.nvtpeDsesgGtYtCaat......sgsasseqgttLtVl<-*
                   +++ ++nvt+ D+   G+Y C    + +++ ++a+  ++++L V    
   mKIAA0364   366 nsFFLkNVTYRDA---GIYSCHYYltwktsIKMATY-NTVELMVV    406  

IGc2: domain 2 of 5, from 414 to 473: score 3.4, E = 2.5
                   *->leGqsVtLtCp.asgdpvpnItWlkgkplp...sgstLtiknvsleD
                      + G ++tL+C+      + +  W   +  ++ + ++   i++++   
   mKIAA0364   414    KVGKTITLQCRvSHPVLEFSLEWEERTTFQkfsVDGDFLITDIEGQG 460  

                   sGlYtCvArNsvg<-*
                    G+Y+C+ r +++   
   mKIAA0364   461 TGTYSCSYRIEAH    473  

IG: domain 5 of 7, from 408 to 489: score 12.6, E = 7.5
                   *->pp.vtvkeGesvtLtC.as......titWy.............LtI.
                       p+ + k+G ++tL+C++s++    ++ W  +++ ++ + ++++ I+
   mKIAA0364   408    WPsSVFKVGKTITLQCrVShpvlefSLEWEerttfqkfsvdgdFLIt 454  

                   nvtpeDsesgGtYtCaat......sgsasseqgttLtVl<-*
                   +++ + +   GtY C  +   +++  s+ s ++ +L      
   mKIAA0364   455 DIEGQGT---GTYSCSYRieahpnTWSHRS-KPLKLVGP    489  

IGc2: domain 3 of 5, from 676 to 739: score 9.2, E = 0.61
                   *->leGqsVtLtCpasgdpvpnItWlk...gkplp......sgstLtikn
                      + Gq ++++C+    ++  +  +k+++ +p+++ +  + + + ti++
   mKIAA0364   676    IRGQELQIRCK-GWLEGLGFALYKkgeQEPVQqlgavgREAFFTIQR 721  

                   vsleDsGlYtCvArNsvg<-*
                   ++  D+G+Y+C+   ++    
   mKIAA0364   722 MEDKDEGNYSCRTHTEMQ    739  

IG: domain 6 of 7, from 670 to 755: score 11.5, E = 9.8
                   *->pp.vtvkeGesvtLtC.as....titWy...................
                       +  +  +G+ ++++C+ +  +  + +y+++ + + ++ +  ++   
   mKIAA0364   670    ISaSLPIRGQELQIRCkGWleglGFALYkkgeqepvqqlgavgreaf 716  

                   LtI.nvtpeDsesgGtYtCaat.......sgsasseqgttLtVl<-*
                   +tI++ +  D+   G+Y C+ ++   + ++ + s   + +L ++   
   mKIAA0364   717 FTIqRMEDKDE---GNYSCRTHtemqpfkWSEPSE--PLELVIK    755  

IGc2: domain 4 of 5, from 772 to 840: score 5.1, E = 1.6
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt
                       +G  Vt++C  +  +  ++  +k+g ++++++   +++++s  +  
   mKIAA0364   772    TPGSRVTFNCS-TSHEHMSFILYKdGNEIAssdlawgnpggSTAHFL 817  

                   iknvsleDsGlYtCvA..rNsvg<-*
                   i +v  +D G+Y+C+  + + ++   
   mKIAA0364   818 IISVGIGDGGNYSCRYydFSIWS    840  

	[output cut off at A = 10 top alignments]
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