hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mph/mph01359/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0364 ( 1026 res) mph01359 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- IG Immunoglobulin 113.5 2.3e-29 7 IGc2 Immunoglobulin C-2 Type 58.3 9.6e-13 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- IG 1/7 34 114 .. 1 58 [] 7.0 33 IG 2/7 128 213 .. 1 58 [] 10.9 12 IG 3/7 224 308 .. 1 58 [] 14.3 4.7 IGc2 1/5 325 390 .. 1 56 [] 32.8 4.8e-05 IG 4/7 319 406 .. 1 58 [] 28.4 0.001 IGc2 2/5 414 473 .. 1 56 [] 3.4 2.5 IG 5/7 408 489 .. 1 58 [] 12.6 7.5 IGc2 3/5 676 739 .. 1 56 [] 9.2 0.61 IG 6/7 670 755 .. 1 58 [] 11.5 9.8 IGc2 4/5 772 840 .. 1 56 [] 5.1 1.6 IG 7/7 766 851 .. 1 58 [] 28.9 0.00072 IGc2 5/5 864 923 .. 1 56 [] 8.0 0.82 Alignments of top-scoring domains: IG: domain 1 of 7, from 34 to 114: score 7.0, E = 33 *->pp.vtvkeGesvtLtC.as..............titWy......... +++ + e++tL C+ ++ +++ ++++++tW +++ ++ + mKIAA0364 34 ESnYPQAPWENITLWCkSPsrvsskflllkdnsQMTWIrppyktfqv 80 .LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* ++ I+ +t++++ G Y+C ++ +++s ++ ++ l mKIAA0364 81 sFFIgALTESNT---GLYRCCYWKEKGWS-KPSKILEL 114 IG: domain 2 of 7, from 128 to 213: score 10.9, E = 12 *->pp.vtvkeGesvtLtC.as....titWy................... + ++ +G +v++ C+ + + + +++ + + + + + ++++ mKIAA0364 128 QAeTPPLPGCNVNIFChGWlqdlVFMLFkegytepvdyqvptgtmai 174 LtI.nvtpeDsesgGtYtCaat......sgsasseqgttLtVl<-* + I+n+ pe++ G+Y C+ + ++ s s ++ +L V mKIAA0364 175 FSIdNLAPENE---GVYICRTHiqmlptLWSEPS-NPLKLVVA 213 IG: domain 3 of 7, from 224 to 308: score 14.3, E = 4.7 *->pp.vtvkeGesvtLtC.as....titWy................... p+ +Ges++L+C+ + + t+ +++ + +++ ++++ ++ mKIAA0364 224 HPgPILAPGESLSLRCqGPiygmTFALMrledlkksfyhkkpiknea 270 .LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-* + +++++ +D+ G Y C +++ gs s + ++ V+ mKIAA0364 271 yFYFqDLKIQDT---GHYLCFYYdgsyRGSLLS-DILKIWVT 308 IGc2: domain 1 of 5, from 325 to 390: score 32.8, E = 4.8e-05 *->leGqsVtLtCpasgdpvpnItWlk...gkplp........sgstLti ++Gq+V+L+C+ ++ +k++++kpl+ + ++++++++ + mKIAA0364 325 QMGQNVSLRCG-GLMDGVGLALYKkgeEKPLQfldassntGNNSFFL 370 knvsleDsGlYtCvArNsvg<-* knv++ D+G+Y+C + mKIAA0364 371 KNVTYRDAGIYSCHYYLTWK 390 IG: domain 4 of 7, from 319 to 406: score 28.4, E = 0.001 *->pp.vtvkeGesvtLtC.as....titWy................... +p+ + + G++v+L+C+ ++ + +y+++ ++ + + ++++++ mKIAA0364 319 QPsPVIQMGQNVSLRCgGLmdgvGLALYkkgeekplqfldassntgn 365 ..LtI.nvtpeDsesgGtYtCaat......sgsasseqgttLtVl<-* +++ ++nvt+ D+ G+Y C + +++ ++a+ ++++L V mKIAA0364 366 nsFFLkNVTYRDA---GIYSCHYYltwktsIKMATY-NTVELMVV 406 IGc2: domain 2 of 5, from 414 to 473: score 3.4, E = 2.5 *->leGqsVtLtCp.asgdpvpnItWlkgkplp...sgstLtiknvsleD + G ++tL+C+ + + W + ++ + ++ i++++ mKIAA0364 414 KVGKTITLQCRvSHPVLEFSLEWEERTTFQkfsVDGDFLITDIEGQG 460 sGlYtCvArNsvg<-* G+Y+C+ r +++ mKIAA0364 461 TGTYSCSYRIEAH 473 IG: domain 5 of 7, from 408 to 489: score 12.6, E = 7.5 *->pp.vtvkeGesvtLtC.as......titWy.............LtI. p+ + k+G ++tL+C++s++ ++ W +++ ++ + ++++ I+ mKIAA0364 408 WPsSVFKVGKTITLQCrVShpvlefSLEWEerttfqkfsvdgdFLIt 454 nvtpeDsesgGtYtCaat......sgsasseqgttLtVl<-* +++ + + GtY C + +++ s+ s ++ +L mKIAA0364 455 DIEGQGT---GTYSCSYRieahpnTWSHRS-KPLKLVGP 489 IGc2: domain 3 of 5, from 676 to 739: score 9.2, E = 0.61 *->leGqsVtLtCpasgdpvpnItWlk...gkplp......sgstLtikn + Gq ++++C+ ++ + +k+++ +p+++ + + + + ti++ mKIAA0364 676 IRGQELQIRCK-GWLEGLGFALYKkgeQEPVQqlgavgREAFFTIQR 721 vsleDsGlYtCvArNsvg<-* ++ D+G+Y+C+ ++ mKIAA0364 722 MEDKDEGNYSCRTHTEMQ 739 IG: domain 6 of 7, from 670 to 755: score 11.5, E = 9.8 *->pp.vtvkeGesvtLtC.as....titWy................... + + +G+ ++++C+ + + + +y+++ + + ++ + ++ mKIAA0364 670 ISaSLPIRGQELQIRCkGWleglGFALYkkgeqepvqqlgavgreaf 716 LtI.nvtpeDsesgGtYtCaat.......sgsasseqgttLtVl<-* +tI++ + D+ G+Y C+ ++ + ++ + s + +L ++ mKIAA0364 717 FTIqRMEDKDE---GNYSCRTHtemqpfkWSEPSE--PLELVIK 755 IGc2: domain 4 of 5, from 772 to 840: score 5.1, E = 1.6 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt +G Vt++C + + ++ +k+g ++++++ +++++s + mKIAA0364 772 TPGSRVTFNCS-TSHEHMSFILYKdGNEIAssdlawgnpggSTAHFL 817 iknvsleDsGlYtCvA..rNsvg<-* i +v +D G+Y+C+ + + ++ mKIAA0364 818 IISVGIGDGGNYSCRYydFSIWS 840 [output cut off at A = 10 top alignments] //