hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mph/mph01359/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0364 ( 1026 res) mph01359 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ig Immunoglobulin domain 110.6 3e-29 8 V-set Immunoglobulin V-set domain 15.0 0.019 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ig 1/8 42 99 .. 1 65 [] 8.9 7.2 ig 2/8 136 192 .. 1 65 [] 6.6 12 ig 3/8 232 289 .. 1 65 [] 3.1 29 ig 4/8 327 385 .. 1 65 [] 18.8 0.13 V-set 1/2 314 406 .. 1 130 [] 10.4 0.055 ig 5/8 416 468 .. 1 65 [] 22.8 0.0078 ig 6/8 678 734 .. 1 65 [] 11.3 4.1 ig 7/8 774 833 .. 1 65 [] 30.0 5.7e-05 V-set 2/2 762 851 .. 1 130 [] 4.9 0.2 ig 8/8 866 918 .. 1 65 [] 9.4 6.5 Alignments of top-scoring domains: ig: domain 1 of 8, from 42 to 99: score 8.9, E = 7.2 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e tL C + ++ ++ ++ +l+++ ++t + + + + + mKIAA0364 42 WENITLWCKS--PSRVSSKFLLLKDNSqMTwIRPPYKTFQVS----- 81 tsLtitnvtpeDggtYtCvv<-* + i ++t++ +g Y+C mKIAA0364 82 --FFIGALTESNTGLYRCCY 99 ig: domain 2 of 8, from 136 to 192: score 6.6, E = 12 *->GesvtLtCsvsgfgppdvtvtWlrngk.ltgvlvtssenngdstyqt G v++ C+ Wl++ + + ++++ + + + ++t mKIAA0364 136 GCNVNIFCHG-----------WLQDLVfMLFKEGYTEPVDYQVPTGT 171 ..sLtitnvtpeDggtYtCvv<-* +++i n+ pe +g+Y C+ mKIAA0364 172 maIFSIDNLAPENEGVYICRT 192 ig: domain 3 of 8, from 232 to 289: score 3.1, E = 29 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ges++L+C+ + t+ + r + ++ + + n+ mKIAA0364 232 GESLSLRCQG---PIYGMTFALMRLEDlKKsFYHKKPIKNEAY---- 271 tsLtitnvtpeDggtYtCvv<-* + +++++ +D+g Y C mKIAA0364 272 --FYFQDLKIQDTGHYLCFY 289 ig: domain 4 of 8, from 327 to 385: score 18.8, E = 0.13 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ v+L+C ++v + +++ g +++ l ss ++++s mKIAA0364 327 GQNVSLRCGG---LMDGVGLALYKKGEeKPlQFLDASSNTGNNS--- 367 tsLtitnvtpeDggtYtCvv<-* + ++nvt+ D+g+Y+C+ mKIAA0364 368 --FFLKNVTYRDAGIYSCHY 385 V-set: domain 1 of 2, from 314 to 406: score 10.4, E = 0.055 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysG.tfddssss + q p+ + + + G++v+L+C G+ +d+ mKIAA0364 314 TWLLVQ--PS----------P-VIQMGQNVSLRC---GgLMDGV--- 341 sgtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsg + y+ + +f + + +g mKIAA0364 342 ----GLALYK-KGE----------------------EKPLQFLDASSNTG 364 npskgdfsLtIsnlqlsDsGtYyCa.............gggtrLtVl<-* n+s ++n++ D G+Y C+ + +++ + + + ++L+V+ mKIAA0364 365 NNS-----FFLKNVTYRDAGIYSCHyyltwktsikmatYNTVELMVV 406 ig: domain 5 of 8, from 416 to 468: score 22.8, E = 0.0078 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++ tL+C+vs + + ++ W + + +v+++ mKIAA0364 416 GKTITLQCRVS-HPVLEFSLEWEERTTfQKfSVDGD----------- 450 tsLtitnvtpeDggtYtCvv<-* + it+++ + +gtY+C mKIAA0364 451 --FLITDIEGQGTGTYSCSY 468 ig: domain 6 of 8, from 678 to 734: score 11.3, E = 4.1 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ + ++C ++ + +++ g + + +l+ + ++ mKIAA0364 678 GQELQIRCKG---WLEGLGFALYKKGEqEPvQQLGAVGREAF----- 716 tsLtitnvtpeDggtYtCvv<-* +ti++++ D+g+Y+C+ mKIAA0364 717 --FTIQRMEDKDEGNYSCRT 734 ig: domain 7 of 8, from 774 to 833: score 30.0, E = 5.7e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++vt++Cs+ ++++ ++ ++++g ++ +++l+ n g+st mKIAA0364 774 GSRVTFNCST---SHEHMSFILYKDGNeIAsSDLAWG--NPGGSTAH 815 tsLtitnvtpeDggtYtCvv<-* + i +v +Dgg+Y+C+ mKIAA0364 816 --FLIISVGIGDGGNYSCRY 833 V-set: domain 2 of 2, from 762 to 851: score 4.9, E = 0.2 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + ++ s +v +G +vt++C+ s mKIAA0364 762 FFKTWA--------------SPVVTPGSRVTFNCSTS---------- 784 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn ++ +++ + +++ + gn mKIAA0364 785 HE-HMSFIL-YKD------------------------GNEIASSDLAWGN 808 pskgdfsLtIsnlqlsDsGtYyCa..........gggtrLtVl<-* p++++++ I ++ D G Y C + + +++ + ++L+V+ mKIAA0364 809 PGGSTAHFLIISVGIGDGGNYSCRyydfsiwsepSNPVELVVT 851 ig: domain 8 of 8, from 866 to 918: score 9.4, E = 6.5 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++ tL+C+ p+v++ + ++g + ++ + + + mKIAA0364 866 GKDITLQCRG---PLPGVEFVLEHDGEeAPqQFSEDGD--------- 900 tsLtitnvtpeDggtYtCvv<-* ++i n++ g+Y+C mKIAA0364 901 --FVIDNLEGKGIGNYSCSY 918 //