hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic05059/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0361  ( 744 res)   mic05059

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AIRS_C   AIR synthase related protein, C-terminal dom    78.0      2e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AIRS_C     1/1     253   398 ..     1   193 []    78.0    2e-19

Alignments of top-scoring domains:
AIRS_C: domain 1 of 1, from 253 to 398: score 78.0, E = 2e-19
                   *->kpGDvlillgsttkktGrsGlhGnglslvrklleesglpdsdeperp
                      + G +l++  s+    G+++l+G++ +++ + +  +++p        
   mKIAA0361   253    GKGHLLYVPLSP----GQHRLGGTA-LAQCFSQLGEHPP-------- 286  

                   avqitlgdplleptliyvvlllaalgetgglvkamhDitgGGLagalaEm
                     +  l+ p+ + + ++  + l  +       +++hD+++GGL+ +l Em
   mKIAA0361   287 --D--LDLPENLVRAFHITQGLLKE----CRLCSGHDVSDGGLVTCLLEM 328  

                   apagsglGaeidldrsaIPvweevpvfeelmkaGnrvlglemlfsenqGr
                   a+a +++G+e+d++        ++ + +           l  lf+e++G 
   mKIAA0361   329 AFA-GNCGIEVDVP--------APGIHA-----------LPVLFAEEPGL 358  

                   glvvvvpeeaveevlailekeglpsgkeaavIGeVtaggglevvvk<-*
                   +l+v +++ a   v+++ e++gl     + ++G++++ g   +  +   
   mKIAA0361   359 VLEVQEADVA--GVRQRYESAGL----RCLELGHTGEAGPQAMARI    398  

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