hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbh/mbh00193/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0360 ( 1055 res) mbh00193 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 130.7 1.6e-34 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnF_C2H2 1/7 423 445 .. 1 23 [] 25.8 0.0059 ZnF_C2H2 2/7 451 473 .. 1 23 [] 26.8 0.0029 ZnF_C2H2 3/7 680 702 .. 1 23 [] 11.0 18 ZnF_C2H2 4/7 708 730 .. 1 23 [] 26.5 0.0037 ZnF_C2H2 5/7 740 762 .. 1 23 [] 27.7 0.0016 ZnF_C2H2 6/7 959 981 .. 1 23 [] 26.1 0.0047 ZnF_C2H2 7/7 988 1011 .. 1 23 [] 20.6 0.23 Alignments of top-scoring domains: ZnF_C2H2: domain 1 of 7, from 423 to 445: score 25.8, E = 0.0059 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC + C k+f s +aL+ H+r+H mKIAA0360 423 HKCRF-CAKVFGSDsALQIHLRSH 445 ZnF_C2H2: domain 2 of 7, from 451 to 473: score 26.8, E = 0.0029 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cg +f+++++Lk H +H mKIAA0360 451 YKCNV-CGNRFTTRgNLKVHFHRH 473 ZnF_C2H2: domain 3 of 7, from 680 to 702: score 11.0, E = 18 *->ykCpigCgksfssk.aLkrHmrvH<-* +C i C ++ s ++aL+ H+ +H mKIAA0360 680 NQCVI-CLRVLSCPrALRLHYGQH 702 ZnF_C2H2: domain 4 of 7, from 708 to 730: score 26.5, E = 0.0037 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cg+ fs++++L+ H H mKIAA0360 708 FKCKV-CGRAFSTRgNLRAHFVGH 730 ZnF_C2H2: domain 5 of 7, from 740 to 762: score 27.7, E = 0.0016 *->ykCpigCgksfssk.aLkrHmrvH<-* Cpi C+k+f+++ L++H+r+H mKIAA0360 740 NSCPI-CQKKFTNAvTLQQHVRMH 762 ZnF_C2H2: domain 6 of 7, from 959 to 981: score 26.1, E = 0.0047 *->ykCpigCgksfssk.aLkrHmrvH<-* C++ Cg+sf++++aL++H+++H mKIAA0360 959 KACEV-CGQSFPTQtALEEHQKTH 981 ZnF_C2H2: domain 7 of 7, from 988 to 1011: score 20.6, E = 0.23 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C + C + f ++ Lk+Hm H mKIAA0360 988 FTCVF-CRQGFLDRaTLKKHMLlAH 1011 //