hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00193/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0360  ( 1055 res)   mbh00193

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         129.4    6.5e-35   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/8      85   107 ..     1    24 []    11.3        8
zf-C2H2    2/8     423   445 ..     1    24 []    23.6   0.0046
zf-C2H2    3/8     451   473 ..     1    24 []    27.3  0.00037
zf-C2H2    4/8     680   702 ..     1    24 []     2.1       61
zf-C2H2    5/8     708   730 ..     1    24 []    30.0  5.5e-05
zf-C2H2    6/8     740   762 ..     1    24 []    26.2  0.00077
zf-C2H2    7/8     959   981 ..     1    24 []    27.0  0.00044
zf-C2H2    8/8     988  1011 ..     1    24 []    22.1    0.013

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 8, from 85 to 107: score 11.3, E = 8
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C  +C   Fs++ ++ +H++++   
   mKIAA0360    85    QVCA-KCCAQFSDPTEFLAHQNSC    107  

zf-C2H2: domain 2 of 8, from 423 to 445: score 23.6, E = 0.0046
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC   C k+F + s L+ Hlr+H   
   mKIAA0360   423    HKCR-FCAKVFGSDSALQIHLRSH    445  

zf-C2H2: domain 3 of 8, from 451 to 473: score 27.3, E = 0.00037
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cg +F++++nLk H  +H   
   mKIAA0360   451    YKCN-VCGNRFTTRGNLKVHFHRH    473  

zf-C2H2: domain 4 of 8, from 680 to 702: score 2.1, E = 61
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C  +C ++ s +  L+ H   H   
   mKIAA0360   680    NQCV-ICLRVLSCPRALRLHYGQH    702  

zf-C2H2: domain 5 of 8, from 708 to 730: score 30.0, E = 5.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +Cg++Fs+++nL++H   H   
   mKIAA0360   708    FKCK-VCGRAFSTRGNLRAHFVGH    730  

zf-C2H2: domain 6 of 8, from 740 to 762: score 26.2, E = 0.00077
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +Cp +C+k+F++  +L++H r+H   
   mKIAA0360   740    NSCP-ICQKKFTNAVTLQQHVRMH    762  

zf-C2H2: domain 7 of 8, from 959 to 981: score 27.0, E = 0.00044
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C+ +Cg+sF ++  L+ H++tH   
   mKIAA0360   959    KACE-VCGQSFPTQTALEEHQKTH    981  

zf-C2H2: domain 8 of 8, from 988 to 1011: score 22.1, E = 0.013
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ++C   C + F ++++Lk+H+   H   
   mKIAA0360   988    FTCV-FCRQGFLDRATLKKHMLLaH    1011 

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