hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05815/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0358  ( 1581 res)   mbg05815

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DENN     DENN (AEX-3) domain                            387.4   1.4e-112   1
uDENN    uDENN domain                                   154.4    1.9e-42   1
dDENN    dDENN domain                                   107.8      2e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
uDENN      1/1      11   101 ..     1   108 []   154.4  1.9e-42
DENN       1/1     175   405 ..     1   231 []   387.4 1.4e-112
dDENN      1/1     488   561 ..     1    81 []   107.8    2e-28

Alignments of top-scoring domains:
uDENN: domain 1 of 1, from 11 to 101: score 154.4, E = 1.9e-42
                   *->carLfDyfVvVgldkkpsglgPDelagdneylPellrqFPSKllahy
                      c+rL Dy+V+Vg+++++        +++ +++Pellr++P       
   mKIAA0358    11    CPRLLDYLVIVGARHPS--------SDSVAQTPELLRRYP------- 42   

                   kedhedepfdlksipkFCfPegldsvsvrevnalrdpqfFsFvLTdeDsk
                    edh+++p+ + ++++FC+Peg+ sv++r++ +lrd+++F+F+LTd+D++
   mKIAA0358    43 LEDHPEFPL-PPDVVFFCQPEGCLSVRQRRM-SLRDDTSFVFTLTDKDTG 90   

                   RtryGfCltfy<-*
                    tryG+C++fy   
   mKIAA0358    91 VTRYGICVNFY    101  

DENN: domain 1 of 1, from 175 to 405: score 387.4, E = 1.4e-112
                   *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk
                       +++s+C++S++pff++Fr++L++lkr++d++++++l ++ g+++g+
   mKIAA0358   175    STLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGIPRGV 221  

                   srdtvwrvltgvl.......evLhdirElEslirnLlyeVplPapGktir
                   +rdt+wr++tg+l  +++++++L d+rE+E++i++Ll++ p+P++G++ r
   mKIAA0358   222 QRDTMWRIFTGSLlveekssALLQDLREIEAWIYRLLRS-PVPVSGQK-R 269  

                   vkvvvlssgvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlq
                   v+++vl++++     +++++f+lpdp++++l+df+l++++e+LGv+ +lq
   mKIAA0358   270 VDIEVLPQEL-----QQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQ 314  

                   LfaaaLlErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLl
                   +++++LlE+k++++S+++++Ls++++A+va++YPle+++p+IP+LP++++
   mKIAA0358   315 VLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMA 364  

                   sAEdvLcAPtPFlIGVhssffelvkdlpleidvvvVDLDtn<-*
                   sAE++L+APtP++IGV++sff ++ d+++++dv++VDLD+n   
   mKIAA0358   365 SAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSN    405  

dDENN: domain 1 of 1, from 488 to 561: score 107.8, E = 2e-28
                   *->lddqvreaFLrfFN.asllggYrnfLryprkapewegardevvtFqk
                      +d+++r+a++rfFN+a++l+g+++++r++r++p+      +vv+Fq 
   mKIAA0358   488    VDVATRVAMVRFFNsANVLQGFQMHTRTLRLFPR------PVVAFQA 528  

                   eaFLksrprssqraFlsrlletQAVemFaeFIeeR<-*
                   ++FL+srpr++   F+++l++tQAVe+F e+I+++   
   mKIAA0358   529 GSFLASRPRQTP--FAEKLARTQAVEYFGEWILNP    561  

//