hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg05391/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0357 ( 1471 res) mbg05391 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Spc97_Spc98 Spc97 / Spc98 family 434.9 7.2e-127 1 AAA_5 ATPase family associated with various cel 101.9 1.2e-26 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Spc97_Spc98 1/1 2 370 .. 1 784 [] 434.9 7.2e-127 AAA_5 1/3 603 732 .. 1 184 [] 45.1 1.5e-09 AAA_5 2/3 880 1024 .. 1 184 [] 53.9 3.5e-12 AAA_5 3/3 1207 1352 .. 1 184 [] 2.8 0.014 Alignments of top-scoring domains: Spc97_Spc98: domain 1 of 1, from 2 to 370: score 434.9, E = 7.2e-127 *->LlrdlLYaLlGidGkyikfnneidYmDrNrnkneasateafklrvqi L++ mKIAA0357 2 LVI-------------------------------------------- 4 skflprslrsllrrllelGlyYqsLieiareilsvekFiekssgfneirk Gl + mKIAA0357 5 ------------------GLCHE--------------------------- 9 rsasqlenkesvGlvgqAlcaaLseeLqdYyaliaqlEqqlrddlslsLf mKIAA0357 - -------------------------------------------------- - dlallslktdassskkslslrrLlrwlqpplsrlreLavskelilsvvlq +++ + +++ ++ mKIAA0357 10 ------------------------FKFGYFCVFFSPFP------------ 23 iGkllnkiiNkasdklkvlkGgelLsllqFykfakekhGDpevrkllekL +kGgel+s++ + ++ k+GDp++++l++++ mKIAA0357 24 ----------------LGRKGGELASAV--HAYT--KTGDPYMKSLVQHI 53 LteisgPyykmlenWiykGeLeDtygEFFIkeneditsmslQvenskkyl L +s+P++++l++Wiy+GeLeDty+EFF+++++++ mKIAA0357 54 LSLVSHPVLSFLYRWIYDGELEDTYHEFFVASDPTV-------------- 89 eeleklillkpedksdryWhkkYkLrpdmiPsFlpmdlAnkILltGKslN k+dr+Wh+kY+Lr+ miPsF++md+++k+Ll+GKs+N mKIAA0357 90 -------------KTDRLWHDKYTLRKSMIPSFITMDQSRKVLLIGKSIN 126 fLrecckelnikwsqepneiisNevkdINvnidknsdtnqssdssilisd fL+++c+++ ++++++++ mKIAA0357 127 FLHQVCHDQ--TPTTKMIA------------------------------- 143 dvidkrirlerlNldqyissdHIkvgefasDlekSerrtsvgmnksiiNi mKIAA0357 - -------------------------------------------------- - KvkeNvsdleKrflkkyrdeyelesyeadksaeelkrlkllsyftdtsfe ++ksae++ ++++l+++ +++f+ mKIAA0357 144 ---------------------------VTKSAESPRDAADLFTDLENAFQ 166 elIdeayeeaakhLldllveeydLlgHlkalKrYLLLgqGDFiqafmdka Id+ay+e++k+Lld+l+++y+Ll+H++a++rYLLLgqGDFi+++md++ mKIAA0357 167 GKIDAAYFETSKYLLDVLNKKYSLLEHMQAMRRYLLLGQGDFIRHLMDLL 216 keeLGekkPhykknaiadllsNFFphkLtslLqlAlrksnafdknnlrle k+eL +P a++l+ +h+Lt++L++A+r++na + mKIAA0357 217 KPEL--VRP-------ATTLY---QHNLTGILETAVRATNA--Q------ 246 sitievdplkskdvedllnriktneenntnnmNevnNenkavdavsdevl +d+ +e+l mKIAA0357 247 -----FDS--------------------------------------PEIL 253 knldankkldsrvlepvpgdlnvtGWevfsLeYkvdwPLslvftpevFls k+ld+ r+le +pgd tGW+vfsL+Y+vd+P+++vft+e+ +s mKIAA0357 254 KRLDV------RLLEVSPGD---TGWDVFSLDYHVDGPIATVFTREC-MS 293 kYlriFrfLwrlKrvehqLemkiWkehmfnkgsnnasrklsspikreiaq +Ylr+F+fLwr Kr+e++L+ +i+k hm+n++ +++ +e++ mKIAA0357 294 HYLRVFNFLWRAKRMEYILT-DIRKGHMCNAKLLRNM--------PEFSG 334 alrrssllReeMlhFvknlqyYilfeVIEsnWqeHlq<-* l+++++l +eM+hF++++qyYi+feV+E++W+e l+ mKIAA0357 335 VLHQCHILASEMVHFIHQMQYYITFEVLECSWDE-LW 370 AAA_5: domain 1 of 3, from 603 to 732: score 45.1, E = 1.5e-09 *->pvlLvGppGtGKtelaerLaaalsgqggrpvfyvqltrdtteedllg Gp+GtGKte ++ L +al g v + ++++++++ mKIAA0357 603 A----GPAGTGKTETTKDLGRAL----GIMVYVFNCSEQMDYKSC-- 639 rrniaplleGngttswvdgpLvrAaryaretegslpeghilvlDEinras g ++ + ++g+++++DE+nr+s mKIAA0357 640 ------------------GNIYKGLA---------QTGAWGCFDEFNRIS 662 pevlnvLl........slLderrlllpdggelvkvppydklaergreeld evl v + ++ ++ + d+++++ + g e+ ++p mKIAA0357 663 VEVLSVVAvqvksiqdAIRDKKQRFSFLGEEISLDPS------------- 699 lwklgrlihdfrlIatsNpldgprglnelsaALrrRFlfvtvdpp<-* + ++ t+Np++ +g+ el+++L+ +F ++ +p mKIAA0357 700 ----------VGIFITMNPGY--AGRTELPENLKALFRPCAMVVP 732 AAA_5: domain 2 of 3, from 880 to 1024: score 53.9, E = 3.5e-12 *->pvlLvGppGtGKtelaerLaaalsgqggrpvfyvqltrdtteedllg +v+ vG +GtGK+++ + L + ++ + +rpv++ ++++ t ++l+g mKIAA0357 880 SVFVVGGAGTGKSQVLRSLHKTYQIMRRRPVWTDLNPKAVTNDELFG 926 rrniaplleGngttswvdgpLvrAaryaretegslpeghilvlDEinras ++n + t++w dg + +r + + ++ ++il++++i+ mKIAA0357 927 IIN-------PATREWKDGLFSSIMR-ELAIISHDGPKWILLDGDID--- 965 pevlnvLlslLderrlllpdggelvkvppydklaergreeldlwklgrli p ++++L++++d+++ l+ +e+++ +p+ mKIAA0357 966 PMWIESLNTVMDDNKVLTLASNERIPLNPT-------------------- 995 hdfrlIatsNpldgprglnelsaALrrRFlfvtvdpp<-* +rl+++ l+ +A+++R + ++ p mKIAA0357 996 --MRLLFEISHLR------TATPATVSRAGILYINPA 1024 AAA_5: domain 3 of 3, from 1207 to 1352: score 2.8, E = 0.014 *->pvlLvGppGtGKtelaerLaaalsgqggrpvfyvqltrdtteedllg pv+LvGp+G+GK+ l+ + l+++ + v v+++ +tt++ l mKIAA0357 1207 PVMLVGPAGSGKSVLVGAKLSSLNPE-EYMVKNVPFNYYTTSAMLQA 1252 rrniaplleGngttswvdgpLvrAaryaretegslpeghilvlDEinras ++ pL + a r++ + + ++ i+++D+ n+ + mKIAA0357 1253 VLE---------------KPLEKKAG--RNYGPPGNRKLIYFIDDMNMPE 1285 pevlnvLl......slLderrlllpdggelvkvppydklaergreeldlw ++ ++ +++ + Ld ++++ d+++l +++ mKIAA0357 1286 VDAYGTVQphtvirQHLDYGHWY--DRNKLSLKEIMN------------- 1320 klgrlihdfrlIatsNpldgprglnelsaALrrRFlfvtvdpp<-* ++ I +Np g + + L+r F ++ p mKIAA0357 1321 --------VQYISCMNPTA---GSFTINPRLQRHFSVFALCFP 1352 //