hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg18666/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0356  ( 887 res)   mbg18666

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       Pleckstrin homology domain.                     77.0    2.3e-18   2
C1       Protein kinase C conserved region 1 (C1) dom    25.7     0.0066   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/2     365   457 ..     1    82 []    46.9  2.8e-09
PH         2/2     515   610 ..     1    82 []    30.3  0.00026
C1         1/1     818   871 ..     1    61 []    25.7   0.0066

Alignments of top-scoring domains:
PH: domain 1 of 2, from 365 to 457: score 46.9, E = 2.8e-09
                   *->vikeGwLlkks.k.swkkryfvLfn..gvLlyyksk.kpkgsipLsg
                      + k G++ +++  + wk+ ++ L + + +L++ ++++++ +s +L  
   mKIAA0356   365    LMKLGTVARRGaMgIWKEFFCELSPleFRLYLSDEErTCVESCSLLR 411  

                   csvre.p....cFeivt.drtlllqAeseeereeWvealqsaiaka<-*
                   c+ + ++++++ Fe+v++++ l l+A+s++e+e+W++  ++a++k    
   mKIAA0356   412 CEAVGpAhsdgRFELVFsGKKLALRASSQDEAEDWLDRVREALQKV    457  

PH: domain 2 of 2, from 515 to 610: score 30.3, E = 0.00026
                   *->vikeGwLlkksk.swkkryfvLfngvLlyyksk.kpkgsipLsgc.s
                       ike  L+ +  ++w ++ f L   +L +++ ++  k+  +  g+++
   mKIAA0356   515    AIKESLLYLYADrTWVPYIFSLSLESLKCFRVRnNEKMLSDSHGVeT 561  

                   vre.p.........cFeivt.drtlllqAeseeereeWvealqsaiaka<
                   +r+  ++ + +++  F+i+t + +l lqA++ ee++ W +  ++++a++ 
   mKIAA0356   562 IRDiLpdtslggpaFFKIITaKAVLKLQAKNTEEATHWRDLVRKVLASY  610  

                   -*
                     
   mKIAA0356     -    -    

C1: domain 1 of 1, from 818 to 871: score 25.7, E = 0.0066
                   *->Hkfvfrtf..kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkk
                      H +++  +++++  C++C++  + ++ ++  ++ +rC eC+ ++H++
   mKIAA0356   818    HVYHCDLCtqRGFICQICHHQDIIFPFEF--DTTVRCAECRTVFHQS 862  

                   CaekvpaqshksglsC<-*
                   C++ v +        C   
   mKIAA0356   863 CQAVVRK-------GC    871  

//