hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg18666/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0356  ( 887 res)   mbg18666

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       PH domain                                       40.6    3.5e-08   2
PHD      PHD-finger                                      -0.5       0.32   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/2     365   455 ..     1    92 []    28.2  0.00019
PH         2/2     515   608 ..     1    92 []    12.5      1.7
PHD        1/1     831   877 ..     1    51 []    -0.5     0.32

Alignments of top-scoring domains:
PH: domain 1 of 2, from 365 to 455: score 28.2, E = 0.00019
                   *->vikeGwLlkkggkkswkkRyfvLfn..dvLlyykdkkkkpkgsipLs
                      ++k G + ++g+ + wk+ ++ L + + +L++ +++  +++ s +L 
   mKIAA0356   365    LMKLGTVARRGAMGIWKEFFCELSPleFRLYLSDEE-RTCVESCSLL 410  

                   giqvekvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair<-
                    ++ + + +   +  Fe++++++ +l l+a+s++e+++W++  ++a+   
   mKIAA0356   411 RCEAVGPAH--SDGRFELVFsGK-KLALRASSQDEAEDWLDRVREALQ   455  

                   *
                    
   mKIAA0356     -   -    

PH: domain 2 of 2, from 515 to 608: score 12.5, E = 1.7
                   *->vikeGwLlkkggkkswkkRyfvLfndvLlyykdkk..kkpkgsipLs
                       ike  L+++   ++w ++ f L   +L +++ ++++k +  s  ++
   mKIAA0356   515    AIKESLLYLYA-DRTWVPYIFSLSLESLKCFRVRNneKMLSDSHGVE 560  

                   gi.qvekvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair<
                   +i+ + ++++ + +  F+i+t    +l lqa++ ee+++W +  +++++ 
   mKIAA0356   561 TIrDILPDTSLGGPAFFKIITaKA-VLKLQAKNTEEATHWRDLVRKVLA  608  

                   -*
                     
   mKIAA0356     -    -    

PHD: domain 1 of 1, from 831 to 877: score -0.5, E = 0.32
                   *->yCsvCgkpddd......aggdllqCDgCdrwfHlaClgppleeppeg
                      +C++C+     +   +   +  + C +C   fH++C     +     
   mKIAA0356   831    ICQICHH---QdiifpfEFDTTVRCAECRTVFHQSCQAVVRK--G-- 870  

                   kWlCpeCtpk<-*
                      Cp+C ++   
   mKIAA0356   871 ---CPRCARR    877  

//