hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph01349/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0354  ( 674 res)   mph01349

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac       110.5      2e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      28   127 ..     1   114 []   110.5    2e-28

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 28 to 127: score 110.5, E = 2e-28
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cD+++vvg+         ++f+a  H++vLaac   S++F+alf+  
   mKIAA0354    28    CDCVIVVGN---------RHFKA--HRSVLAAC---STHFRALFSVa 60   

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                   +++++ + i+ld e    +v++eaF al++ +Yt++l l e+   nv+++
   mKIAA0354    61 egdqtmnmIQLDSE----VVTAEAFAALIDMMYTsTLMLGES---NVMDV 103  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   L +A+ l    ++ ++v++C+ +l +++   
   mKIAA0354   104 LLAASHL----HLNsVVKACKHYLTTRT    127  

//