hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01349/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0354  ( 674 res)   mph01349

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      BTB/POZ domain                                 139.8    4.8e-38   1
zf-C2H2  Zinc finger, C2H2 type                          33.0    6.8e-06   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      18   127 ..     1   135 []   139.8  4.8e-38
zf-C2H2    1/2     610   632 ..     1    24 []    13.2      5.3
zf-C2H2    2/2     638   661 ..     1    24 []    27.7  0.00027

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 18 to 127: score 139.8, E = 4.8e-38
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln +r++g+lcD+++vvg+        ++fkAH+ vLaacS+ F+al
   mKIAA0354    18    LNYQRLHGQLCDCVIVVGN--------RHFKAHRSVLAACSTHFRAL 56   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F+        ++ ++++ +++ e v++e+f al++ +Yt++l++      
   mKIAA0354    57 FSVAEG----DQTMNMI-QLDSEVVTAEAFAALIDMMYTSTLMLG----- 96   

                   PssckseenvedlLalAadllqipslvdkCeefliksl<-*
                         e+nv+d+L +A ++l++ s+v++C ++l + +   
   mKIAA0354    97 ------ESNVMDVLLAA-SHLHLNSVVKACKHYLTTRT    127  

zf-C2H2: domain 1 of 2, from 610 to 632: score 13.2, E = 5.3
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +C k+F +  + k+H+r+H   
   mKIAA0354   610    YACK-ICCKTFLTLTDCKKHIRVH    632  

zf-C2H2: domain 2 of 2, from 638 to 661: score 27.7, E = 0.00027
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y C  +Cgk+Fs++s+L +H +t++   
   mKIAA0354   638    YACL-KCGKRFSQSSHLYKHSKTtC    661  

//