hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/meh/meh01314/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0352  ( 686 res)   meh01314

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac        94.1    1.6e-23   1
ZnF_C2H2 zinc finger                                     91.8    8.4e-23   9

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1       4   100 ..     1   114 []    94.1  1.6e-23
ZnF_C2H2   1/9     346   368 ..     1    23 []    13.5      9.5
ZnF_C2H2   2/9     374   394 ..     1    23 []     7.3       47
ZnF_C2H2   3/9     425   448 ..     1    23 []     3.2  1.4e+02
ZnF_C2H2   4/9     454   476 ..     1    23 []    13.2       10
ZnF_C2H2   5/9     482   504 ..     1    23 []    23.1     0.04
ZnF_C2H2   6/9     512   534 ..     1    23 []    23.7    0.026
ZnF_C2H2   7/9     579   601 ..     1    23 []    25.9   0.0058
ZnF_C2H2   8/9     607   629 ..     1    23 []    18.7     0.82
ZnF_C2H2   9/9     635   657 ..     1    23 []    19.2     0.57

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 4 to 100: score 94.1, E = 1.6e-23
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDvt+vvg          ++f+a  HkavLa+     +yF++lf+++
   mKIAA0352     4    CDVTIVVGS---------RSFPA--HKAVLACA---AGYFQNLFLNt 36   

                   .......ieldDeallievspeaFralLnflYt.kldlpeedvenveelL
                   + +  +++ +d+      ++p  F+ +L+f Yt++l+ +     nv  + 
   mKIAA0352    37 gldaartYVVDF------ITPANFEKILSFVYTsELFTDLI---NVGVIY 77   

                   elAdfldSYGqip.lvelCeefllknl<-*
                   e A++l    ++++l ++C++   + +   
   mKIAA0352    78 EVAERL----GMEdLLRACHSTFPDLE    100  

ZnF_C2H2: domain 1 of 9, from 346 to 368: score 13.5, E = 9.5
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        C++ C  +f ++++ + H+ +H   
   mKIAA0352   346    GNCKV-CETHFQDRnSRVTHVLSH    368  

ZnF_C2H2: domain 2 of 9, from 374 to 394: score 7.3, E = 47
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ C  +f ++ +L+ H r     
   mKIAA0352   374    FSCDM-CETKFFTQwQLTLHRR--    394  

ZnF_C2H2: domain 3 of 9, from 425 to 448: score 3.2, E = 1.4e+02
                   *->ykCpigCg.ksfssk.aLkrHmrvH<-*
                      +kC + Cg+   ++ +  + H+  H   
   mKIAA0352   425    LKCAV-CGkALAKDFhVVRCHILEH    448  

ZnF_C2H2: domain 4 of 9, from 454 to 476: score 13.2, E = 10
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        C+i C+++  +  +L  Hm +H   
   mKIAA0352   454    QACSI-CDQRHLNLcSLMWHMLSH    476  

ZnF_C2H2: domain 5 of 9, from 482 to 504: score 23.1, E = 0.04
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ C  sf +++ L++Hm vH   
   mKIAA0352   482    FSCSV-CASSFVDWhLLEKHMVVH    504  

ZnF_C2H2: domain 6 of 9, from 512 to 534: score 23.7, E = 0.026
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C++sf+s+ a++ H+ +H   
   mKIAA0352   512    FRCHL-CSQSFRSEaAYRYHVSQH    534  

ZnF_C2H2: domain 7 of 9, from 579 to 601: score 25.9, E = 0.0058
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk+f + ++++ H r+H   
   mKIAA0352   579    YSCKV-CGKRFAHTsEFNYHRRIH    601  

ZnF_C2H2: domain 8 of 9, from 607 to 629: score 18.7, E = 0.82
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+k f+ ++  k H+++H   
   mKIAA0352   607    YQCKV-CHKFFRGRsTIKCHLKTH    629  

ZnF_C2H2: domain 9 of 9, from 635 to 657: score 19.2, E = 0.57
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg   s+ + + +H+ vH   
   mKIAA0352   635    YRCTV-CGHYSSTLnLMSKHVGVH    657  

	[output cut off at A = 10 top alignments]
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