hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/meh/meh01314/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0352  ( 686 res)   meh01314

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      BTB/POZ domain                                  87.6    2.5e-22   1
zf-C2H2  Zinc finger, C2H2 type                          79.7    5.8e-20  10

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1       1   100 [.     1   135 []    87.6  2.5e-22
zf-C2H2    1/10    317   340 ..     1    24 []    -0.0       98
zf-C2H2    2/10    346   368 ..     1    24 []     8.9       14
zf-C2H2    3/10    374   396 ..     1    24 []     6.2       25
zf-C2H2    4/10    425   448 ..     1    24 []     1.3       73
zf-C2H2    5/10    454   476 ..     1    24 []     7.6       18
zf-C2H2    6/10    482   504 ..     1    24 []    24.0   0.0035
zf-C2H2    7/10    512   534 ..     1    24 []    18.9     0.12
zf-C2H2    8/10    579   601 ..     1    24 []    29.5  7.6e-05
zf-C2H2    9/10    607   629 ..     1    24 []    21.7    0.017
zf-C2H2   10/10    635   657 ..     1    24 []    16.0      0.9

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 1 to 100: score 87.6, E = 2.5e-22
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                        e ++     DVt+vvg         ++f+AHKavLa++  YF++l
   mKIAA0352     1    --ETMC-----DVTIVVG--------SRSFPAHKAVLACAAGYFQNL 32   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F++++      +      ++  ++++p  fe +L+f Yt+el+ +     
   mKIAA0352    33 FLNTG-----LDAAR---TYVVDFITPANFEKILSFVYTSELFTD----- 69   

                   PssckseenvedlLalAadllqipslvdkCeefliksl<-*
                         + nv  + + A ++l +++l ++C++ +       
   mKIAA0352    70 ------LINVGVIYEVA-ERLGMEDLLRACHSTFPDLE    100  

zf-C2H2: domain 1 of 10, from 317 to 340: score -0.0, E = 98
                   *->ykCpfdCgksFsrksnLkr.HlrtH<-*
                        C+ +C+k+   + +L r+H r H   
   mKIAA0352   317    MPCQ-VCKKVLEPNIQLIRqHARDH    340  

zf-C2H2: domain 2 of 10, from 346 to 368: score 8.9, E = 14
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C+ +C + F ++ +  +H  +H   
   mKIAA0352   346    GNCK-VCETHFQDRNSRVTHVLSH    368  

zf-C2H2: domain 3 of 10, from 374 to 396: score 6.2, E = 25
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  C ++F ++ +L+ H+r     
   mKIAA0352   374    FSCD-MCETKFFTQWQLTLHRRDG    396  

zf-C2H2: domain 4 of 10, from 425 to 448: score 1.3, E = 73
                   *->ykCpfdCgksFsrk.snLkrHlrtH<-*
                       kC  +Cgk+     +  + H+  H   
   mKIAA0352   425    LKCA-VCGKALAKDfHVVRCHILEH    448  

zf-C2H2: domain 5 of 10, from 454 to 476: score 7.6, E = 18
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        C+ +C+++  +  +L  H+ +H   
   mKIAA0352   454    QACS-ICDQRHLNLCSLMWHMLSH    476  

zf-C2H2: domain 6 of 10, from 482 to 504: score 24.0, E = 0.0035
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C  sF +++ L++H+ +H   
   mKIAA0352   482    FSCS-VCASSFVDWHLLEKHMVVH    504  

zf-C2H2: domain 7 of 10, from 512 to 534: score 18.9, E = 0.12
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  C +sF++ + ++ H   H   
   mKIAA0352   512    FRCH-LCSQSFRSEAAYRYHVSQH    534  

zf-C2H2: domain 8 of 10, from 579 to 601: score 29.5, E = 7.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F + s+++ H+r+H   
   mKIAA0352   579    YSCK-VCGKRFAHTSEFNYHRRIH    601  

zf-C2H2: domain 9 of 10, from 607 to 629: score 21.7, E = 0.017
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C+k F+ +s+ k Hl+tH   
   mKIAA0352   607    YQCK-VCHKFFRGRSTIKCHLKTH    629  

zf-C2H2: domain 10 of 10, from 635 to 657: score 16.0, E = 0.9
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cg   s+   + +H  +H   
   mKIAA0352   635    YRCT-VCGHYSSTLNLMSKHVGVH    657  

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