hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm09073/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0348 ( 1299 res) mpm09073 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Syja_N SacI homology domain 235.8 6.3e-67 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase fa 161.6 1.3e-44 1 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD 6.4 0.044 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Syja_N 1/1 1 214 [. 1 366 [] 235.8 6.3e-67 Exo_endo_phos 1/1 397 727 .. 1 202 [] 161.6 1.3e-44 RRM_1 1/1 757 828 .. 1 74 [] 6.4 0.044 Alignments of top-scoring domains: Syja_N: domain 1 of 1, from 1 to 214: score 235.8, E = 6.3e-67 *->iyGllGlIkLkggdvmLyYLivITgkskVGqigpghaIYkitdvdfi ++ + mKIAA0348 1 -----------SS-------------------L-------------- 3 slnndsvdetdiekkDEarylkihPdgisTdtqeklpkhPcslLkkvLst sv+++ ++ ++ mKIAA0348 4 -----SVRSS---------FPA--------------------SFT----- 14 gtFYFSytyDltntLQrnskvlraplenlessvdradesifdiITdyner +++++++ +++ mKIAA0348 15 ------------------------GSSSRAPVRTQWM------------- 27 FvWNsfLleelinfRshLdneekqqlnverFllpvIhGfikqaslyvngk N+ L+ +l+ ++q+n++ +ll+vI+G+++++++y+ +k mKIAA0348 28 ---NQLLHVPLR----------QHQVNCHNWLLKVICGVVTIRTVYASHK 64 tisltLISRRStkRAGTRFlkRGvnddGhVANFVETEQIVydsdskseka +++++LISR+S++RAG+RFl+RGvnddGhV+NFVETEQ +y++d +s mKIAA0348 65 QAKACLISRISCERAGARFLTRGVNDDGHVSNFVETEQTIYMDDGVS--- 111 rysSFVQvRGSIPLFWeQdvegsnLsyKPlivlrsveatapafdrHFddl SFVQ+RGS+PLFWeQ+ g+++++++l+++r++ea+apaf+rH+ l mKIAA0348 112 ---SFVQIRGSVPLFWEQP--GLQVGSHHLRLHRGLEANAPAFERHMVLL 156 kqrYGnpivIvNLiktkkekEkplsklyeeflkaseylnsflpeeekiry k++YG ++v+vNL+++ +++E+ l+++++++l+as+++++ +++ mKIAA0348 157 KEQYG-KQVVVNLLGS-RGGEEVLNRAFKKLLWASCHAGD-------TPM 197 tsFDFHkeckqmnmswdrl<-* ++FDFH+++k++ + ++l mKIAA0348 198 INFDFHQFAKGR--KLEKL 214 Exo_endo_phos: domain 1 of 1, from 397 to 727: score 161.6, E = 1.3e-44 *->lkvltwNvnglra.l.l......................llellr.e + v+twNvng ++ ++ ++ + +++ + ++ ++ + ++ + mKIAA0348 397 IAVGTWNVNGGKQfRsNllgtaeltdwlldapqlsgavdSQDDGSpA 443 dpDvicLQEvklsp.slll.l.ll.gyv...................... d i++ E++ +++ +++ + + + ++ +++++ ++ + mKIAA0348 444 DVFAIGFEEMVELSaGNIVnAsTTnRKMwgeqlqkaisrshryilltsaq 493 .........................vytgfgg.gggkgGVailsklplls + ++ + + ++ ++v+tg+gg+ g+kg+V+i+++l+ mKIAA0348 494 lvgvclyifvrpyhvpfirdvaidtVKTGMGGkAGNKGAVGIRFQLH--- 540 vilgidfirvilasgt.fvvvntHlpagg.rldeRlaqyaelldflsf.. t+f++v++Hl+ag++ + eR+++y+e+ ++lsf++ mKIAA0348 541 --------------STsFCFVCSHLTAGQsQVKERNEDYREITHKLSFps 576 .....rsdpvilcGDfNarpdeidsa.lk.igkstl.............. +++ ++d+v++cGDfN+r+d + +++++++ + ++ + +++ mKIAA0348 577 grnifSHDYVFWCGDFNYRIDLTYEEvFYfVKRQDWkklmefdqlqlqks 626 .........elpigfppTywsyrgs.....sekkrtpsrlDrilvsg.ll +++ ++ +e+ f pTy+++ gs ++s+k+rtp+++Dr+l+ ++ + mKIAA0348 627 sgkifkdfhEGAVNFGPTYKYDVGSaaydtSDKCRTPAWTDRVLWWRkKH 676 .rvvil.ille...........................vlgSDHrPVlat ++ + ++ l + +++ +++++ +++ ++++ + ++ ++ +SDHrPVla mKIAA0348 677 pYDKTAgELNLldsdldgdpqirhtwspgtlkyygraeLQASDHRPVLAI 726 l<-* + mKIAA0348 727 V 727 RRM_1: domain 1 of 1, from 757 to 828: score 6.4, E = 0.044 *->lfVgNLppdttee.........dLkdlFskfGpiesikivrDttret + V +p + e+++ +++ +++L + +++G i i + ++ mKIAA0348 757 VVVNLQSPTLEEKnefpedlrtELMQTLGNYGTI--ILVRIN----- 796 grskGfaFVeFedeedAekAldalnGkelggrelrv<-* G V+F+d+ +A ++ld +G++++gr +++ mKIAA0348 797 ---QGQMLVTFADSHSALSVLD-VDGMKVKGRAVKI 828 //