hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01034/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0346  ( 708 res)   mpj01034

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
JmjC     JmjC domain                                    164.1    2.3e-45   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
JmjC       1/1     442   550 ..     1   126 []   164.1  2.3e-45

Alignments of top-scoring domains:
JmjC: domain 1 of 1, from 442 to 550: score 164.1, E = 2.3e-45
                   *->wlyiGmpfSttpwHiedqglySinylhfgapkvWYaiPpeyaekfek
                      +ly+++p+S+tp+H+e+++++S+n+++++++++W+a+ ++y+e++  
   mKIAA0346   442    QLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETIS- 487  

                   lhkflskhfsapdleggeqpdhDlrhlvtlisPkvlpLlenGipvyrfvQ
                     +f++ h+              + +l+ +++P++++L++ +ipvyrfvQ
   mKIAA0346   488 --AFCDRHG--------------VDYLTGSWWPILDDLYASNIPVYRFVQ 521  

                   kpGEfVftfPgayHqvfNlGfniaeavNF<-*
                   +pG+ V++++g++H+v+ +G+++++a+N+   
   mKIAA0346   522 RPGDLVWINAGTVHWVQATGWCNNIAWNV    550  

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